Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0317 and Rru_A0318 are separated by 8 nucleotides Rru_A0318 and Rru_A0319 overlap by 8 nucleotides Rru_A0319 and Rru_A0320 are separated by 13 nucleotides
Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282
_A0317
Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818
_A0318
Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476
_A0319
Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085
_A0320
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 387.867 kb on - strand, within Rru_A0317 at 387.867 kb on - strand, within Rru_A0317 at 388.166 kb on - strand, within Rru_A0317 at 388.352 kb on - strand, within Rru_A0318 at 388.832 kb on + strand at 388.907 kb on + strand, within Rru_A0319 at 388.908 kb on - strand, within Rru_A0319 at 388.908 kb on - strand, within Rru_A0319 at 388.980 kb on - strand, within Rru_A0319 at 388.983 kb on - strand, within Rru_A0319 at 388.983 kb on - strand, within Rru_A0319 at 389.042 kb on + strand, within Rru_A0319 at 389.042 kb on + strand, within Rru_A0319 at 389.043 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.244 kb on - strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.405 kb on + strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.406 kb on - strand, within Rru_A0319 at 389.455 kb on + strand at 389.455 kb on + strand at 389.506 kb on + strand at 389.507 kb on - strand at 389.509 kb on + strand at 389.510 kb on - strand at 389.510 kb on - strand at 389.519 kb on - strand at 389.519 kb on - strand at 389.553 kb on + strand at 389.554 kb on - strand at 389.799 kb on + strand, within Rru_A0320 at 389.800 kb on - strand, within Rru_A0320 at 389.823 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.895 kb on + strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.896 kb on - strand, within Rru_A0320 at 389.943 kb on + strand, within Rru_A0320 at 389.943 kb on + strand, within Rru_A0320 at 389.944 kb on - strand, within Rru_A0320 at 389.944 kb on - strand, within Rru_A0320 at 389.976 kb on + strand, within Rru_A0320 at 389.977 kb on - strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.978 kb on + strand, within Rru_A0320 at 389.979 kb on - strand, within Rru_A0320 at 389.979 kb on - strand, within Rru_A0320 at 389.979 kb on - strand, within Rru_A0320 at 389.983 kb on - strand, within Rru_A0320 at 390.306 kb on + strand, within Rru_A0320 at 390.306 kb on + strand, within Rru_A0320 at 390.306 kb on + strand, within Rru_A0320 at 390.307 kb on - strand, within Rru_A0320 at 390.307 kb on - strand, within Rru_A0320 at 390.307 kb on - strand, within Rru_A0320 at 390.418 kb on - strand, within Rru_A0320 at 390.418 kb on - strand, within Rru_A0320 at 390.441 kb on + strand, within Rru_A0320 at 390.441 kb on + strand, within Rru_A0320 at 390.441 kb on + strand, within Rru_A0320 at 390.441 kb on + strand, within Rru_A0320 at 390.442 kb on - strand, within Rru_A0320 at 390.443 kb on + strand, within Rru_A0320 at 390.443 kb on + strand, within Rru_A0320 at 390.444 kb on - strand, within Rru_A0320 at 390.444 kb on - strand, within Rru_A0320 at 390.444 kb on - strand, within Rru_A0320 at 390.471 kb on + strand, within Rru_A0320 at 390.472 kb on - strand, within Rru_A0320 at 390.472 kb on - strand, within Rru_A0320 at 390.472 kb on - strand, within Rru_A0320
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 387,867 - Rru_A0317 0.54 -2.3 387,867 - Rru_A0317 0.54 +1.2 388,166 - Rru_A0317 0.87 +0.2 388,352 - Rru_A0318 0.12 -2.0 388,832 + +0.2 388,907 + Rru_A0319 0.14 +0.2 388,908 - Rru_A0319 0.15 -1.4 388,908 - Rru_A0319 0.15 -2.0 388,980 - Rru_A0319 0.25 +0.2 388,983 - Rru_A0319 0.26 +0.5 388,983 - Rru_A0319 0.26 -1.4 389,042 + Rru_A0319 0.35 -3.3 389,042 + Rru_A0319 0.35 -2.7 389,043 - Rru_A0319 0.35 -1.6 389,244 - Rru_A0319 0.65 -1.2 389,244 - Rru_A0319 0.65 -1.4 389,244 - Rru_A0319 0.65 -3.5 389,244 - Rru_A0319 0.65 -0.8 389,244 - Rru_A0319 0.65 -1.0 389,405 + Rru_A0319 0.89 -0.8 389,405 + Rru_A0319 0.89 -2.4 389,405 + Rru_A0319 0.89 +0.2 389,405 + Rru_A0319 0.89 -0.8 389,406 - Rru_A0319 0.89 -0.8 389,406 - Rru_A0319 0.89 +0.2 389,406 - Rru_A0319 0.89 -2.1 389,455 + -0.6 389,455 + -1.8 389,506 + -1.6 389,507 - -1.4 389,509 + +0.2 389,510 - +0.2 389,510 - +0.2 389,519 - +0.2 389,519 - -0.8 389,553 + +0.2 389,554 - -1.6 389,799 + Rru_A0320 0.19 -1.7 389,800 - Rru_A0320 0.19 -0.6 389,823 + Rru_A0320 0.21 -2.4 389,895 + Rru_A0320 0.25 -2.5 389,895 + Rru_A0320 0.25 -1.9 389,895 + Rru_A0320 0.25 +0.2 389,895 + Rru_A0320 0.25 +0.2 389,895 + Rru_A0320 0.25 +0.2 389,895 + Rru_A0320 0.25 -2.4 389,895 + Rru_A0320 0.25 +1.2 389,895 + Rru_A0320 0.25 -1.4 389,896 - Rru_A0320 0.25 -0.1 389,896 - Rru_A0320 0.25 +1.2 389,896 - Rru_A0320 0.25 -0.8 389,896 - Rru_A0320 0.25 +0.2 389,896 - Rru_A0320 0.25 -2.5 389,896 - Rru_A0320 0.25 +0.8 389,896 - Rru_A0320 0.25 +0.2 389,943 + Rru_A0320 0.28 -1.4 389,943 + Rru_A0320 0.28 +0.2 389,944 - Rru_A0320 0.28 -0.8 389,944 - Rru_A0320 0.28 +0.2 389,976 + Rru_A0320 0.30 -0.6 389,977 - Rru_A0320 0.31 +0.2 389,978 + Rru_A0320 0.31 -1.4 389,978 + Rru_A0320 0.31 +0.2 389,978 + Rru_A0320 0.31 -1.9 389,978 + Rru_A0320 0.31 -0.2 389,978 + Rru_A0320 0.31 -3.1 389,978 + Rru_A0320 0.31 +0.2 389,978 + Rru_A0320 0.31 +0.2 389,979 - Rru_A0320 0.31 -3.0 389,979 - Rru_A0320 0.31 -0.6 389,979 - Rru_A0320 0.31 -1.1 389,983 - Rru_A0320 0.31 +0.2 390,306 + Rru_A0320 0.51 +0.2 390,306 + Rru_A0320 0.51 +0.2 390,306 + Rru_A0320 0.51 +0.2 390,307 - Rru_A0320 0.51 -0.5 390,307 - Rru_A0320 0.51 -0.8 390,307 - Rru_A0320 0.51 -0.8 390,418 - Rru_A0320 0.58 +0.2 390,418 - Rru_A0320 0.58 +0.2 390,441 + Rru_A0320 0.60 +0.2 390,441 + Rru_A0320 0.60 -0.8 390,441 + Rru_A0320 0.60 -1.6 390,441 + Rru_A0320 0.60 -1.7 390,442 - Rru_A0320 0.60 +0.2 390,443 + Rru_A0320 0.60 +0.2 390,443 + Rru_A0320 0.60 -0.4 390,444 - Rru_A0320 0.60 -1.4 390,444 - Rru_A0320 0.60 -1.8 390,444 - Rru_A0320 0.60 -0.4 390,471 + Rru_A0320 0.61 +0.2 390,472 - Rru_A0320 0.62 -2.5 390,472 - Rru_A0320 0.62 -0.8 390,472 - Rru_A0320 0.62 -1.6
Or see this region's nucleotide sequence