Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0286

Experiment: Succinic Acid; Light intensity 150 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0285 and Rru_A0286 are separated by 9 nucleotidesRru_A0286 and Rru_A0287 are separated by 48 nucleotides Rru_A0285: Rru_A0285 - Aldehyde dehydrogenase (NCBI), at 350,136 to 351,656 _A0285 Rru_A0286: Rru_A0286 - hypothetical protein (NCBI), at 351,666 to 352,466 _A0286 Rru_A0287: Rru_A0287 - hypothetical protein (NCBI), at 352,515 to 353,675 _A0287 Position (kb) 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1at 350.927 kb on + strand, within Rru_A0285at 350.928 kb on - strand, within Rru_A0285at 351.087 kb on + strand, within Rru_A0285at 351.087 kb on + strand, within Rru_A0285at 351.088 kb on - strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.258 kb on + strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.259 kb on - strand, within Rru_A0285at 351.333 kb on + strand, within Rru_A0285at 351.345 kb on + strand, within Rru_A0285at 351.346 kb on - strand, within Rru_A0285at 351.346 kb on - strand, within Rru_A0285at 351.486 kb on - strand, within Rru_A0285at 351.579 kb on + strandat 351.579 kb on + strandat 351.579 kb on + strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.580 kb on - strandat 351.581 kb on + strandat 351.581 kb on + strandat 351.582 kb on - strandat 351.599 kb on + strandat 351.599 kb on + strandat 351.600 kb on - strandat 351.609 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.652 kb on + strandat 351.653 kb on - strandat 351.654 kb on + strandat 351.654 kb on + strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.655 kb on - strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.693 kb on + strandat 351.694 kb on - strandat 351.694 kb on - strandat 351.696 kb on - strandat 351.927 kb on + strand, within Rru_A0286at 351.951 kb on + strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.952 kb on - strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.954 kb on + strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 351.955 kb on - strand, within Rru_A0286at 352.144 kb on - strand, within Rru_A0286at 352.465 kb on - strandat 352.465 kb on - strandat 352.503 kb on + strandat 352.504 kb on - strandat 352.504 kb on - strandat 352.515 kb on - strandat 352.616 kb on + strandat 353.199 kb on + strand, within Rru_A0287at 353.199 kb on + strand, within Rru_A0287at 353.221 kb on - strand, within Rru_A0287at 353.316 kb on + strand, within Rru_A0287

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
remove
350,927 + Rru_A0285 0.52 -0.8
350,928 - Rru_A0285 0.52 -0.8
351,087 + Rru_A0285 0.63 +0.2
351,087 + Rru_A0285 0.63 +0.2
351,088 - Rru_A0285 0.63 -2.0
351,258 + Rru_A0285 0.74 -1.3
351,258 + Rru_A0285 0.74 -0.8
351,258 + Rru_A0285 0.74 -0.4
351,258 + Rru_A0285 0.74 -1.1
351,259 - Rru_A0285 0.74 +0.2
351,259 - Rru_A0285 0.74 +0.9
351,259 - Rru_A0285 0.74 -1.2
351,333 + Rru_A0285 0.79 -2.0
351,345 + Rru_A0285 0.79 -0.8
351,346 - Rru_A0285 0.80 -0.3
351,346 - Rru_A0285 0.80 -0.4
351,486 - Rru_A0285 0.89 +0.2
351,579 + -1.4
351,579 + +0.2
351,579 + +0.2
351,580 - +0.2
351,580 - -1.8
351,580 - +0.2
351,580 - -1.5
351,581 + -0.8
351,581 + +0.2
351,582 - -1.4
351,599 + +0.2
351,599 + -0.8
351,600 - -0.8
351,609 + -0.7
351,652 + +0.2
351,652 + +0.2
351,652 + -1.4
351,652 + -2.1
351,653 - -0.8
351,654 + +0.2
351,654 + -0.8
351,655 - -1.4
351,655 - -1.8
351,655 - -0.4
351,655 - -1.4
351,693 + -1.2
351,693 + -3.1
351,693 + +0.2
351,693 + -0.5
351,693 + -2.6
351,694 - -0.8
351,694 - -1.0
351,696 - -0.6
351,927 + Rru_A0286 0.33 -0.4
351,951 + Rru_A0286 0.36 +0.2
351,952 - Rru_A0286 0.36 +0.2
351,952 - Rru_A0286 0.36 -2.5
351,952 - Rru_A0286 0.36 +0.2
351,954 + Rru_A0286 0.36 -2.3
351,954 + Rru_A0286 0.36 +0.2
351,955 - Rru_A0286 0.36 -1.4
351,955 - Rru_A0286 0.36 -0.8
352,144 - Rru_A0286 0.60 +0.2
352,465 - -1.0
352,465 - +0.2
352,503 + -2.8
352,504 - -2.0
352,504 - +0.2
352,515 - +0.2
352,616 + -1.5
353,199 + Rru_A0287 0.59 -3.3
353,199 + Rru_A0287 0.59 -1.6
353,221 - Rru_A0287 0.61 +0.2
353,316 + Rru_A0287 0.69 +1.2

Or see this region's nucleotide sequence