Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0212

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0211 and Rru_A0212 are separated by 93 nucleotidesRru_A0212 and Rru_A0213 are separated by 3 nucleotides Rru_A0211: Rru_A0211 - hypothetical protein (NCBI), at 263,151 to 263,912 _A0211 Rru_A0212: Rru_A0212 - hypothetical protein (NCBI), at 264,006 to 264,392 _A0212 Rru_A0213: Rru_A0213 - hypothetical protein (NCBI), at 264,396 to 265,736 _A0213 Position (kb) 264 265Strain fitness (log2 ratio) -2 -1 0 1at 263.061 kb on - strandat 263.087 kb on - strandat 263.431 kb on + strand, within Rru_A0211at 263.432 kb on - strand, within Rru_A0211at 263.432 kb on - strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.703 kb on - strand, within Rru_A0211at 263.703 kb on - strand, within Rru_A0211at 263.973 kb on + strandat 263.980 kb on - strandat 264.007 kb on + strandat 264.007 kb on + strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.184 kb on - strand, within Rru_A0212at 264.397 kb on + strandat 264.397 kb on + strandat 265.155 kb on - strand, within Rru_A0213at 265.258 kb on + strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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263,061 - -1.8
263,087 - +0.2
263,431 + Rru_A0211 0.37 -2.1
263,432 - Rru_A0211 0.37 +0.2
263,432 - Rru_A0211 0.37 -1.6
263,702 + Rru_A0211 0.72 -2.1
263,702 + Rru_A0211 0.72 -2.7
263,702 + Rru_A0211 0.72 +0.2
263,703 - Rru_A0211 0.72 +0.2
263,703 - Rru_A0211 0.72 +0.2
263,973 + -1.8
263,980 - -0.8
264,007 + +0.2
264,007 + -1.8
264,008 - +0.9
264,008 - -0.8
264,184 - Rru_A0212 0.46 -1.9
264,397 + -2.6
264,397 + -2.5
265,155 - Rru_A0213 0.57 +0.2
265,258 + Rru_A0213 0.64 -0.8
265,259 - Rru_A0213 0.64 -1.3
265,259 - Rru_A0213 0.64 +0.2

Or see this region's nucleotide sequence