Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0169

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723333 and 11438579 are separated by 0 nucleotides11438579 and 11580942 overlap by 29 nucleotides11580942 and 11723334 overlap by 29 nucleotides11723334 and 11438580 are separated by 0 nucleotides11438580 and 11580943 overlap by 32 nucleotides11580943 and 11723335 overlap by 32 nucleotides11723335 and 11438581 are separated by 0 nucleotides11438581 and 11580944 overlap by 29 nucleotides11580944 and 11723336 overlap by 29 nucleotides11723336 and 11438582 are separated by 0 nucleotides11438582 and 11580945 overlap by 32 nucleotides11580945 and 11723337 overlap by 32 nucleotides11723337 and 11438583 are separated by 0 nucleotides11438583 and 11580946 overlap by 29 nucleotides11580946 and 11723338 overlap by 29 nucleotides11723338 and 11438584 are separated by 0 nucleotides11438584 and 11580947 overlap by 32 nucleotides11580947 and 11723339 overlap by 32 nucleotides11723339 and 11438585 are separated by 0 nucleotides11438585 and 11580948 overlap by 29 nucleotides11580948 and 11723340 overlap by 29 nucleotides11723340 and 11438586 are separated by 0 nucleotides11438586 and 11580949 overlap by 32 nucleotides11580949 and 11723341 overlap by 32 nucleotides11723341 and 11438587 are separated by 0 nucleotides11438587 and 11580950 overlap by 29 nucleotides11580950 and 11723342 overlap by 29 nucleotides11723342 and 11438588 are separated by 0 nucleotides11438588 and 11580951 overlap by 32 nucleotides11580951 and 11723343 overlap by 32 nucleotides11723343 and 11438589 are separated by 0 nucleotides11438589 and 11580952 overlap by 29 nucleotides11580952 and 11723344 overlap by 29 nucleotides11723344 and 11438590 are separated by 0 nucleotides11438590 and 11580953 overlap by 32 nucleotides11580953 and 11723345 overlap by 32 nucleotides11723345 and 11438591 are separated by 0 nucleotides11438591 and 11580954 overlap by 29 nucleotides11580954 and 11723346 overlap by 29 nucleotides11723346 and 11438592 are separated by 0 nucleotides11438592 and 11580955 overlap by 32 nucleotides11580955 and 11723347 overlap by 32 nucleotides11723347 and 11438593 are separated by 0 nucleotides11438593 and 11580956 overlap by 29 nucleotides11580956 and 11723348 overlap by 29 nucleotides11723348 and 11438594 are separated by 0 nucleotides11438594 and 11580957 overlap by 32 nucleotides11580957 and 11723349 overlap by 32 nucleotides11723349 and 11438595 are separated by 0 nucleotides11438595 and 11580958 overlap by 29 nucleotides11580958 and 11723350 overlap by 29 nucleotides11723350 and 11438596 are separated by 0 nucleotides11438596 and 11580959 overlap by 32 nucleotides11580959 and 11723351 overlap by 32 nucleotides11723351 and 11438597 are separated by 0 nucleotides11438597 and 11580960 overlap by 29 nucleotides11580960 and 11723352 overlap by 29 nucleotides11723352 and Rru_A0168 are separated by 145 nucleotidesRru_A0168 and Rru_A0169 overlap by 8 nucleotidesRru_A0169 and Rru_A0170 are separated by 5 nucleotidesRru_A0170 and Rru_A0171 overlap by 4 nucleotides 11438578 - no description, at 199,257 to 199,288 11438578 11580941 - no description, at 199,257 to 199,288 11580941 11723333 - no description, at 199,257 to 199,288 11723333 11438579 - no description, at 199,289 to 199,317 11438579 11580942 - no description, at 199,289 to 199,317 11580942 11723334 - no description, at 199,289 to 199,317 11723334 11438580 - no description, at 199,318 to 199,349 11438580 11580943 - no description, at 199,318 to 199,349 11580943 11723335 - no description, at 199,318 to 199,349 11723335 11438581 - no description, at 199,350 to 199,378 11438581 11580944 - no description, at 199,350 to 199,378 11580944 11723336 - no description, at 199,350 to 199,378 11723336 11438582 - no description, at 199,379 to 199,410 11438582 11580945 - no description, at 199,379 to 199,410 11580945 11723337 - no description, at 199,379 to 199,410 11723337 11438583 - no description, at 199,411 to 199,439 11438583 11580946 - no description, at 199,411 to 199,439 11580946 11723338 - no description, at 199,411 to 199,439 11723338 11438584 - no description, at 199,440 to 199,471 11438584 11580947 - no description, at 199,440 to 199,471 11580947 11723339 - no description, at 199,440 to 199,471 11723339 11438585 - no description, at 199,472 to 199,500 11438585 11580948 - no description, at 199,472 to 199,500 11580948 11723340 - no description, at 199,472 to 199,500 11723340 11438586 - no description, at 199,501 to 199,532 11438586 11580949 - no description, at 199,501 to 199,532 11580949 11723341 - no description, at 199,501 to 199,532 11723341 11438587 - no description, at 199,533 to 199,561 11438587 11580950 - no description, at 199,533 to 199,561 11580950 11723342 - no description, at 199,533 to 199,561 11723342 11438588 - no description, at 199,562 to 199,593 11438588 11580951 - no description, at 199,562 to 199,593 11580951 11723343 - no description, at 199,562 to 199,593 11723343 11438589 - no description, at 199,594 to 199,622 11438589 11580952 - no description, at 199,594 to 199,622 11580952 11723344 - no description, at 199,594 to 199,622 11723344 11438590 - no description, at 199,623 to 199,654 11438590 11580953 - no description, at 199,623 to 199,654 11580953 11723345 - no description, at 199,623 to 199,654 11723345 11438591 - no description, at 199,655 to 199,683 11438591 11580954 - no description, at 199,655 to 199,683 11580954 11723346 - no description, at 199,655 to 199,683 11723346 11438592 - no description, at 199,684 to 199,715 11438592 11580955 - no description, at 199,684 to 199,715 11580955 11723347 - no description, at 199,684 to 199,715 11723347 11438593 - no description, at 199,716 to 199,744 11438593 11580956 - no description, at 199,716 to 199,744 11580956 11723348 - no description, at 199,716 to 199,744 11723348 11438594 - no description, at 199,745 to 199,776 11438594 11580957 - no description, at 199,745 to 199,776 11580957 11723349 - no description, at 199,745 to 199,776 11723349 11438595 - no description, at 199,777 to 199,805 11438595 11580958 - no description, at 199,777 to 199,805 11580958 11723350 - no description, at 199,777 to 199,805 11723350 11438596 - no description, at 199,806 to 199,837 11438596 11580959 - no description, at 199,806 to 199,837 11580959 11723351 - no description, at 199,806 to 199,837 11723351 11438597 - no description, at 199,838 to 199,866 11438597 11580960 - no description, at 199,838 to 199,866 11580960 11723352 - no description, at 199,838 to 199,866 11723352 Rru_A0168: Rru_A0168 - CRISPR-associated protein, Cas2 (NCBI), at 200,012 to 200,293 _A0168 Rru_A0169: Rru_A0169 - Protein of unknown function DUF48 (NCBI), at 200,286 to 201,227 _A0169 Rru_A0170: Rru_A0170 - CRISPR-associated protein, CT1974 (NCBI), at 201,233 to 201,895 _A0170 Rru_A0171: Rru_A0171 - CRISPR-associated protein, CT1976 (NCBI), at 201,892 to 202,677 _A0171 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.332 kb on - strandat 199.332 kb on - strandat 199.332 kb on - strandat 199.444 kb on + strandat 199.528 kb on + strandat 199.528 kb on + strandat 199.528 kb on + strandat 199.574 kb on + strandat 199.575 kb on - strandat 199.888 kb on + strandat 199.894 kb on - strandat 200.208 kb on + strand, within Rru_A0168at 200.208 kb on + strand, within Rru_A0168at 200.208 kb on + strand, within Rru_A0168at 200.220 kb on + strand, within Rru_A0168at 200.220 kb on + strand, within Rru_A0168at 200.220 kb on + strand, within Rru_A0168at 200.220 kb on + strand, within Rru_A0168at 200.220 kb on + strand, within Rru_A0168at 200.221 kb on - strand, within Rru_A0168at 200.221 kb on - strand, within Rru_A0168at 200.221 kb on - strand, within Rru_A0168at 200.549 kb on + strand, within Rru_A0169at 200.549 kb on + strand, within Rru_A0169at 200.549 kb on + strand, within Rru_A0169at 200.549 kb on + strand, within Rru_A0169at 200.549 kb on + strand, within Rru_A0169at 200.550 kb on - strand, within Rru_A0169at 200.550 kb on - strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.551 kb on + strand, within Rru_A0169at 200.552 kb on - strand, within Rru_A0169at 200.570 kb on - strand, within Rru_A0169at 200.570 kb on - strand, within Rru_A0169at 200.725 kb on + strand, within Rru_A0169at 200.752 kb on + strand, within Rru_A0169at 200.753 kb on - strand, within Rru_A0169at 200.774 kb on - strand, within Rru_A0169at 200.774 kb on - strand, within Rru_A0169at 200.774 kb on - strand, within Rru_A0169at 200.860 kb on + strand, within Rru_A0169at 200.860 kb on + strand, within Rru_A0169at 200.922 kb on + strand, within Rru_A0169at 200.922 kb on + strand, within Rru_A0169at 200.922 kb on + strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 201.138 kb on + strandat 201.234 kb on + strandat 201.235 kb on - strandat 201.235 kb on - strandat 201.235 kb on - strandat 201.273 kb on + strandat 201.273 kb on + strandat 201.274 kb on - strandat 201.351 kb on + strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.717 kb on + strand, within Rru_A0170at 201.718 kb on - strand, within Rru_A0170at 201.886 kb on + strandat 201.887 kb on - strandat 201.887 kb on - strandat 201.887 kb on - strandat 202.142 kb on + strand, within Rru_A0171at 202.142 kb on + strand, within Rru_A0171

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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199,331 + -2.1
199,331 + +0.2
199,331 + +0.2
199,331 + -0.8
199,331 + -2.4
199,332 - +0.2
199,332 - -1.4
199,332 - +0.2
199,444 + -1.9
199,528 + +0.2
199,528 + +0.2
199,528 + -2.8
199,574 + -1.5
199,575 - +1.2
199,888 + +0.2
199,894 - -2.1
200,208 + Rru_A0168 0.70 +0.2
200,208 + Rru_A0168 0.70 +0.3
200,208 + Rru_A0168 0.70 +0.2
200,220 + Rru_A0168 0.74 -1.5
200,220 + Rru_A0168 0.74 -1.0
200,220 + Rru_A0168 0.74 -1.8
200,220 + Rru_A0168 0.74 +0.5
200,220 + Rru_A0168 0.74 -0.5
200,221 - Rru_A0168 0.74 +0.2
200,221 - Rru_A0168 0.74 +0.2
200,221 - Rru_A0168 0.74 -2.1
200,549 + Rru_A0169 0.28 +0.2
200,549 + Rru_A0169 0.28 +0.2
200,549 + Rru_A0169 0.28 -2.4
200,549 + Rru_A0169 0.28 +0.2
200,549 + Rru_A0169 0.28 -1.4
200,550 - Rru_A0169 0.28 -1.8
200,550 - Rru_A0169 0.28 -1.6
200,551 + Rru_A0169 0.28 -2.0
200,551 + Rru_A0169 0.28 +0.2
200,551 + Rru_A0169 0.28 -2.3
200,551 + Rru_A0169 0.28 +0.2
200,551 + Rru_A0169 0.28 -1.6
200,551 + Rru_A0169 0.28 -2.0
200,551 + Rru_A0169 0.28 +0.2
200,551 + Rru_A0169 0.28 +0.2
200,551 + Rru_A0169 0.28 -0.6
200,552 - Rru_A0169 0.28 -2.1
200,570 - Rru_A0169 0.30 -2.5
200,570 - Rru_A0169 0.30 -1.3
200,725 + Rru_A0169 0.47 -1.0
200,752 + Rru_A0169 0.49 -2.8
200,753 - Rru_A0169 0.50 +0.2
200,774 - Rru_A0169 0.52 +0.2
200,774 - Rru_A0169 0.52 -2.2
200,774 - Rru_A0169 0.52 +0.2
200,860 + Rru_A0169 0.61 -1.8
200,860 + Rru_A0169 0.61 -0.4
200,922 + Rru_A0169 0.68 -1.3
200,922 + Rru_A0169 0.68 -1.9
200,922 + Rru_A0169 0.68 -0.8
200,923 - Rru_A0169 0.68 +0.2
200,923 - Rru_A0169 0.68 -2.4
200,923 - Rru_A0169 0.68 +0.2
201,138 + -1.6
201,234 + -1.4
201,235 - +0.2
201,235 - -1.4
201,235 - -1.9
201,273 + -1.5
201,273 + -1.3
201,274 - -1.5
201,351 + Rru_A0170 0.18 +0.2
201,352 - Rru_A0170 0.18 +0.2
201,352 - Rru_A0170 0.18 +0.2
201,352 - Rru_A0170 0.18 +0.2
201,651 + Rru_A0170 0.63 +1.8
201,651 + Rru_A0170 0.63 +0.2
201,651 + Rru_A0170 0.63 -3.1
201,651 + Rru_A0170 0.63 -2.0
201,717 + Rru_A0170 0.73 -0.8
201,718 - Rru_A0170 0.73 -1.2
201,886 + -0.1
201,887 - -1.8
201,887 - -1.8
201,887 - +0.2
202,142 + Rru_A0171 0.32 -0.3
202,142 + Rru_A0171 0.32 -1.2

Or see this region's nucleotide sequence