Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0158

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0157 and Rru_A0158 are separated by 112 nucleotidesRru_A0158 and Rru_A0159 are separated by 138 nucleotides Rru_A0157: Rru_A0157 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 181,624 to 183,198 _A0157 Rru_A0158: Rru_A0158 - chemotaxis sensory transducer (NCBI), at 183,311 to 184,996 _A0158 Rru_A0159: Rru_A0159 - Exodeoxyribonuclease VII (NCBI), at 185,135 to 186,748 _A0159 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3at 182.473 kb on + strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157at 182.725 kb on + strand, within Rru_A0157at 182.725 kb on + strand, within Rru_A0157at 182.726 kb on - strand, within Rru_A0157at 182.726 kb on - strand, within Rru_A0157at 182.848 kb on + strand, within Rru_A0157at 182.848 kb on + strand, within Rru_A0157at 182.849 kb on - strand, within Rru_A0157at 182.850 kb on + strand, within Rru_A0157at 182.850 kb on + strand, within Rru_A0157at 182.851 kb on - strand, within Rru_A0157at 182.929 kb on + strand, within Rru_A0157at 182.930 kb on - strand, within Rru_A0157at 182.930 kb on - strand, within Rru_A0157at 182.935 kb on + strand, within Rru_A0157at 182.935 kb on + strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 182.936 kb on - strand, within Rru_A0157at 183.493 kb on + strand, within Rru_A0158at 183.865 kb on + strand, within Rru_A0158at 184.377 kb on + strand, within Rru_A0158at 184.469 kb on - strand, within Rru_A0158at 184.469 kb on - strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.470 kb on + strand, within Rru_A0158at 184.471 kb on - strand, within Rru_A0158at 184.471 kb on - strand, within Rru_A0158at 184.518 kb on + strand, within Rru_A0158at 184.566 kb on + strand, within Rru_A0158at 184.567 kb on - strand, within Rru_A0158at 184.714 kb on - strand, within Rru_A0158at 184.725 kb on + strand, within Rru_A0158at 184.725 kb on + strand, within Rru_A0158at 184.725 kb on + strand, within Rru_A0158at 184.726 kb on - strand, within Rru_A0158at 184.726 kb on - strand, within Rru_A0158at 184.740 kb on + strand, within Rru_A0158at 184.741 kb on - strand, within Rru_A0158at 184.945 kb on + strandat 184.946 kb on - strandat 184.978 kb on + strandat 184.978 kb on + strandat 184.978 kb on + strandat 184.984 kb on + strandat 185.002 kb on + strandat 185.002 kb on + strandat 185.002 kb on + strandat 185.002 kb on + strandat 185.003 kb on - strandat 185.003 kb on - strandat 185.003 kb on - strandat 185.070 kb on - strandat 185.071 kb on + strandat 185.077 kb on + strandat 185.079 kb on + strandat 185.079 kb on + strandat 185.079 kb on + strandat 185.080 kb on - strandat 185.080 kb on - strandat 185.080 kb on - strandat 185.080 kb on - strandat 185.404 kb on - strand, within Rru_A0159

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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182,473 + Rru_A0157 0.54 -0.5
182,474 - Rru_A0157 0.54 +0.0
182,474 - Rru_A0157 0.54 +0.2
182,513 - Rru_A0157 0.56 +0.2
182,513 - Rru_A0157 0.56 +0.2
182,725 + Rru_A0157 0.70 -2.2
182,725 + Rru_A0157 0.70 -2.3
182,726 - Rru_A0157 0.70 +0.2
182,726 - Rru_A0157 0.70 -2.0
182,848 + Rru_A0157 0.78 -1.5
182,848 + Rru_A0157 0.78 +0.2
182,849 - Rru_A0157 0.78 +0.2
182,850 + Rru_A0157 0.78 -0.7
182,850 + Rru_A0157 0.78 -1.7
182,851 - Rru_A0157 0.78 -1.5
182,929 + Rru_A0157 0.83 -1.1
182,930 - Rru_A0157 0.83 +0.2
182,930 - Rru_A0157 0.83 +0.2
182,935 + Rru_A0157 0.83 +0.2
182,935 + Rru_A0157 0.83 -2.4
182,936 - Rru_A0157 0.83 +0.2
182,936 - Rru_A0157 0.83 -0.2
182,936 - Rru_A0157 0.83 +0.2
183,493 + Rru_A0158 0.11 -1.8
183,865 + Rru_A0158 0.33 -1.4
184,377 + Rru_A0158 0.63 -1.1
184,469 - Rru_A0158 0.69 +0.2
184,469 - Rru_A0158 0.69 +0.2
184,470 + Rru_A0158 0.69 +0.2
184,470 + Rru_A0158 0.69 +3.3
184,470 + Rru_A0158 0.69 +0.2
184,470 + Rru_A0158 0.69 -0.5
184,470 + Rru_A0158 0.69 -2.6
184,470 + Rru_A0158 0.69 -0.8
184,470 + Rru_A0158 0.69 +0.2
184,470 + Rru_A0158 0.69 -0.8
184,471 - Rru_A0158 0.69 -1.0
184,471 - Rru_A0158 0.69 -1.4
184,518 + Rru_A0158 0.72 -1.4
184,566 + Rru_A0158 0.74 +0.2
184,567 - Rru_A0158 0.74 -0.9
184,714 - Rru_A0158 0.83 +0.2
184,725 + Rru_A0158 0.84 +0.2
184,725 + Rru_A0158 0.84 -2.0
184,725 + Rru_A0158 0.84 +0.2
184,726 - Rru_A0158 0.84 -0.8
184,726 - Rru_A0158 0.84 +2.5
184,740 + Rru_A0158 0.85 +0.2
184,741 - Rru_A0158 0.85 +0.2
184,945 + -2.1
184,946 - -0.8
184,978 + +0.2
184,978 + -1.9
184,978 + -1.7
184,984 + -0.3
185,002 + +0.2
185,002 + +0.2
185,002 + -0.9
185,002 + +0.2
185,003 - -0.4
185,003 - -2.1
185,003 - +0.2
185,070 - +0.2
185,071 + -0.8
185,077 + -0.8
185,079 + +0.2
185,079 + -1.8
185,079 + -1.7
185,080 - -1.8
185,080 - -2.2
185,080 - +0.2
185,080 - +0.2
185,404 - Rru_A0159 0.17 +0.2

Or see this region's nucleotide sequence