Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0145

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0144 and Rru_A0145 are separated by 156 nucleotidesRru_A0145 and Rru_A0146 are separated by 109 nucleotidesRru_A0146 and Rru_A0147 are separated by 96 nucleotides Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380 _A0145 Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029 _A0146 Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778 _A0147 Position (kb) 168 169 170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.821 kb on + strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.822 kb on - strand, within Rru_A0144at 167.871 kb on + strand, within Rru_A0144at 167.872 kb on - strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.014 kb on + strand, within Rru_A0144at 168.015 kb on - strand, within Rru_A0144at 168.065 kb on + strand, within Rru_A0144at 168.066 kb on - strand, within Rru_A0144at 168.530 kb on + strandat 168.737 kb on - strandat 168.737 kb on - strandat 168.850 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 170.084 kb on + strandat 170.085 kb on - strandat 170.301 kb on + strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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167,821 + Rru_A0144 0.28 -0.8
167,821 + Rru_A0144 0.28 -0.4
167,821 + Rru_A0144 0.28 -2.1
167,821 + Rru_A0144 0.28 -1.4
167,822 - Rru_A0144 0.28 +0.2
167,822 - Rru_A0144 0.28 +0.2
167,871 + Rru_A0144 0.33 -1.2
167,872 - Rru_A0144 0.33 -1.3
168,014 + Rru_A0144 0.45 -2.1
168,014 + Rru_A0144 0.45 -0.8
168,015 - Rru_A0144 0.46 -1.8
168,065 + Rru_A0144 0.50 -1.3
168,066 - Rru_A0144 0.50 -1.6
168,530 + -1.4
168,737 - -1.1
168,737 - +0.2
168,850 + Rru_A0145 0.13 +0.2
169,082 + Rru_A0145 0.51 -2.2
169,082 + Rru_A0145 0.51 -3.8
169,169 + Rru_A0145 0.65 +0.2
169,169 + Rru_A0145 0.65 -2.4
169,170 - Rru_A0145 0.65 -1.4
169,170 - Rru_A0145 0.65 +0.2
169,218 + Rru_A0145 0.73 -0.7
169,218 + Rru_A0145 0.73 -1.3
169,218 + Rru_A0145 0.73 -0.8
169,218 + Rru_A0145 0.73 -2.2
169,219 - Rru_A0145 0.73 -0.5
169,219 - Rru_A0145 0.73 +0.2
169,220 + Rru_A0145 0.74 +0.2
169,220 + Rru_A0145 0.74 +0.4
169,220 + Rru_A0145 0.74 -1.6
169,220 + Rru_A0145 0.74 -1.8
169,220 + Rru_A0145 0.74 -2.8
169,221 - Rru_A0145 0.74 -1.0
169,221 - Rru_A0145 0.74 -1.2
169,221 - Rru_A0145 0.74 +0.2
170,084 + +0.2
170,085 - +0.2
170,301 + Rru_A0147 0.11 -2.0
170,302 - Rru_A0147 0.11 -1.4
170,302 - Rru_A0147 0.11 +0.2
170,302 - Rru_A0147 0.11 -1.4
170,302 - Rru_A0147 0.11 -1.3
170,344 - Rru_A0147 0.13 -2.1
170,344 - Rru_A0147 0.13 +0.2

Or see this region's nucleotide sequence