Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0134

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0133 and Rru_A0134 are separated by 117 nucleotidesRru_A0134 and Rru_A0135 are separated by 59 nucleotidesRru_A0135 and Rru_A0136 are separated by 118 nucleotides Rru_A0133: Rru_A0133 - Glycosyl transferase, group 1 (NCBI), at 156,027 to 157,061 _A0133 Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666 _A0134 Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301 _A0135 Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346 _A0136 Position (kb) 157 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.958 kb on - strandat 157.131 kb on + strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.190 kb on + strandat 157.191 kb on - strandat 157.251 kb on + strandat 157.251 kb on + strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.343 kb on + strand, within Rru_A0134at 157.590 kb on + strand, within Rru_A0134at 157.764 kb on - strand, within Rru_A0134at 158.100 kb on + strand, within Rru_A0134at 158.100 kb on + strand, within Rru_A0134at 158.101 kb on - strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.317 kb on - strand, within Rru_A0134at 158.317 kb on - strand, within Rru_A0134at 158.463 kb on + strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.644 kb on - strandat 158.644 kb on - strandat 158.644 kb on - strandat 159.076 kb on - strand, within Rru_A0135at 159.085 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.186 kb on - strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.190 kb on - strand, within Rru_A0135at 159.304 kb on + strandat 159.304 kb on + strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.343 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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156,333 + Rru_A0133 0.30 -1.0
156,333 + Rru_A0133 0.30 -1.2
156,333 + Rru_A0133 0.30 -1.4
156,354 + Rru_A0133 0.32 -0.8
156,354 + Rru_A0133 0.32 +0.2
156,354 + Rru_A0133 0.32 -1.5
156,355 - Rru_A0133 0.32 -0.6
156,355 - Rru_A0133 0.32 +0.2
156,355 - Rru_A0133 0.32 +0.2
156,355 - Rru_A0133 0.32 -2.6
156,355 - Rru_A0133 0.32 +0.2
156,393 + Rru_A0133 0.35 +0.2
156,393 + Rru_A0133 0.35 -0.7
156,393 + Rru_A0133 0.35 -0.8
156,393 + Rru_A0133 0.35 -1.5
156,393 + Rru_A0133 0.35 -1.2
156,394 - Rru_A0133 0.35 -2.1
156,394 - Rru_A0133 0.35 -1.4
156,394 - Rru_A0133 0.35 -2.2
156,394 - Rru_A0133 0.35 -2.4
156,395 + Rru_A0133 0.36 +0.2
156,395 + Rru_A0133 0.36 -1.3
156,395 + Rru_A0133 0.36 +0.2
156,395 + Rru_A0133 0.36 -1.6
156,396 - Rru_A0133 0.36 -2.6
156,396 - Rru_A0133 0.36 -1.6
156,396 - Rru_A0133 0.36 +0.2
156,396 - Rru_A0133 0.36 -0.8
156,396 - Rru_A0133 0.36 -2.0
156,396 - Rru_A0133 0.36 -1.9
156,396 - Rru_A0133 0.36 -2.2
156,396 - Rru_A0133 0.36 -2.4
156,576 + Rru_A0133 0.53 +0.2
156,576 + Rru_A0133 0.53 -0.5
156,576 + Rru_A0133 0.53 -2.6
156,958 - -0.2
157,131 + +0.2
157,132 - -2.8
157,132 - +1.2
157,132 - -0.8
157,190 + -2.4
157,191 - -0.8
157,251 + +0.2
157,251 + -0.8
157,252 - -0.4
157,252 - +0.2
157,252 - -0.8
157,343 + Rru_A0134 0.11 -0.3
157,590 + Rru_A0134 0.28 +0.2
157,764 - Rru_A0134 0.39 -0.8
158,100 + Rru_A0134 0.62 +0.2
158,100 + Rru_A0134 0.62 -2.4
158,101 - Rru_A0134 0.62 +0.2
158,118 + Rru_A0134 0.63 -2.4
158,118 + Rru_A0134 0.63 +0.2
158,118 + Rru_A0134 0.63 -1.8
158,118 + Rru_A0134 0.63 -2.4
158,118 + Rru_A0134 0.63 -2.3
158,118 + Rru_A0134 0.63 -1.4
158,119 - Rru_A0134 0.63 -1.2
158,119 - Rru_A0134 0.63 -1.6
158,119 - Rru_A0134 0.63 +0.2
158,119 - Rru_A0134 0.63 +0.2
158,119 - Rru_A0134 0.63 -2.5
158,316 + Rru_A0134 0.76 -0.8
158,316 + Rru_A0134 0.76 +0.2
158,316 + Rru_A0134 0.76 +0.2
158,317 - Rru_A0134 0.76 -1.8
158,317 - Rru_A0134 0.76 -1.1
158,463 + Rru_A0134 0.86 -2.1
158,464 - Rru_A0134 0.86 +0.2
158,464 - Rru_A0134 0.86 -1.1
158,464 - Rru_A0134 0.86 -1.8
158,512 + Rru_A0134 0.90 +0.2
158,512 + Rru_A0134 0.90 -0.5
158,513 - Rru_A0134 0.90 -1.7
158,513 - Rru_A0134 0.90 -2.4
158,513 - Rru_A0134 0.90 +0.2
158,513 - Rru_A0134 0.90 +0.2
158,643 + -1.1
158,643 + -1.4
158,643 + +0.2
158,643 + +0.2
158,643 + -1.2
158,644 - -2.0
158,644 - -0.7
158,644 - -1.4
159,076 - Rru_A0135 0.61 -1.9
159,085 + Rru_A0135 0.62 -2.2
159,185 + Rru_A0135 0.80 -0.8
159,185 + Rru_A0135 0.80 -1.4
159,185 + Rru_A0135 0.80 -3.5
159,186 - Rru_A0135 0.80 -2.1
159,189 + Rru_A0135 0.80 +0.2
159,189 + Rru_A0135 0.80 -2.6
159,190 - Rru_A0135 0.81 -0.8
159,304 + -0.4
159,304 + -1.8
159,305 - +0.2
159,305 - -2.1
159,305 - -1.8
159,343 + +0.2

Or see this region's nucleotide sequence