Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0030

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0029 and Rru_B0030 are separated by 322 nucleotidesRru_B0030 and Rru_B0031 are separated by 83 nucleotides Rru_B0029: Rru_B0029 - Plasmid encoded RepA protein (NCBI), at 27,680 to 28,666 _B0029 Rru_B0030: Rru_B0030 - Hemolysin-type calcium-binding region (NCBI), at 28,989 to 30,377 _B0030 Rru_B0031: Rru_B0031 - hypothetical protein (NCBI), at 30,461 to 31,993 _B0031 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 28.106 kb on + strand, within Rru_B0029at 28.168 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.365 kb on + strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.531 kb on + strand, within Rru_B0029at 28.678 kb on - strandat 28.678 kb on - strandat 28.748 kb on - strandat 28.754 kb on + strandat 28.758 kb on + strandat 28.758 kb on + strandat 28.759 kb on - strandat 28.772 kb on + strandat 28.772 kb on + strandat 28.773 kb on - strandat 28.788 kb on + strandat 28.788 kb on + strandat 28.821 kb on + strandat 28.920 kb on + strandat 28.921 kb on - strandat 28.990 kb on + strandat 28.991 kb on - strandat 29.095 kb on + strandat 29.095 kb on + strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.194 kb on + strand, within Rru_B0030at 29.194 kb on + strand, within Rru_B0030at 29.194 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.240 kb on - strand, within Rru_B0030at 29.240 kb on - strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.253 kb on - strand, within Rru_B0030at 29.361 kb on - strand, within Rru_B0030at 29.653 kb on - strand, within Rru_B0030at 29.690 kb on + strand, within Rru_B0030at 29.731 kb on + strand, within Rru_B0030at 29.731 kb on + strand, within Rru_B0030at 29.731 kb on + strand, within Rru_B0030at 29.732 kb on - strand, within Rru_B0030at 29.732 kb on - strand, within Rru_B0030at 29.732 kb on - strand, within Rru_B0030at 29.737 kb on + strand, within Rru_B0030at 29.737 kb on + strand, within Rru_B0030at 29.737 kb on + strand, within Rru_B0030at 29.737 kb on + strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.738 kb on - strand, within Rru_B0030at 29.840 kb on + strand, within Rru_B0030at 29.854 kb on + strand, within Rru_B0030at 29.854 kb on + strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.855 kb on - strand, within Rru_B0030at 29.954 kb on + strand, within Rru_B0030at 29.954 kb on + strand, within Rru_B0030at 29.954 kb on + strand, within Rru_B0030at 29.954 kb on + strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.955 kb on - strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.956 kb on + strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 29.957 kb on - strand, within Rru_B0030at 30.025 kb on + strand, within Rru_B0030at 30.026 kb on - strand, within Rru_B0030at 30.071 kb on + strand, within Rru_B0030at 30.071 kb on + strand, within Rru_B0030at 30.083 kb on - strand, within Rru_B0030at 30.113 kb on + strand, within Rru_B0030at 30.114 kb on - strand, within Rru_B0030at 30.114 kb on - strand, within Rru_B0030at 30.150 kb on - strand, within Rru_B0030at 30.151 kb on + strand, within Rru_B0030at 30.151 kb on + strand, within Rru_B0030at 30.151 kb on + strand, within Rru_B0030at 30.151 kb on + strand, within Rru_B0030at 30.152 kb on - strand, within Rru_B0030at 30.152 kb on - strand, within Rru_B0030at 30.174 kb on + strand, within Rru_B0030at 30.174 kb on + strand, within Rru_B0030at 30.174 kb on + strand, within Rru_B0030at 30.175 kb on - strand, within Rru_B0030at 30.175 kb on - strand, within Rru_B0030at 30.208 kb on + strand, within Rru_B0030at 30.208 kb on + strand, within Rru_B0030at 30.209 kb on - strand, within Rru_B0030at 30.209 kb on - strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.211 kb on + strand, within Rru_B0030at 30.212 kb on - strand, within Rru_B0030at 30.277 kb on + strandat 30.277 kb on + strandat 30.278 kb on - strandat 30.325 kb on + strandat 30.337 kb on + strandat 30.337 kb on + strandat 30.369 kb on - strandat 30.369 kb on - strandat 30.369 kb on - strandat 30.371 kb on + strandat 30.385 kb on - strandat 30.432 kb on + strandat 30.432 kb on + strandat 30.483 kb on + strandat 30.483 kb on + strandat 30.484 kb on - strandat 30.484 kb on - strandat 30.484 kb on - strandat 30.677 kb on + strand, within Rru_B0031at 30.677 kb on + strand, within Rru_B0031at 30.677 kb on + strand, within Rru_B0031at 30.677 kb on + strand, within Rru_B0031at 30.677 kb on + strand, within Rru_B0031at 30.678 kb on - strand, within Rru_B0031at 30.954 kb on + strand, within Rru_B0031at 30.955 kb on - strand, within Rru_B0031at 30.955 kb on - strand, within Rru_B0031at 31.102 kb on + strand, within Rru_B0031at 31.102 kb on + strand, within Rru_B0031at 31.103 kb on - strand, within Rru_B0031at 31.103 kb on - strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.291 kb on - strand, within Rru_B0031at 31.291 kb on - strand, within Rru_B0031at 31.317 kb on + strand, within Rru_B0031at 31.318 kb on - strand, within Rru_B0031at 31.318 kb on - strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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27,991 + Rru_B0029 0.32 -0.0
27,991 + Rru_B0029 0.32 -1.3
27,991 + Rru_B0029 0.32 -1.0
27,991 + Rru_B0029 0.32 +1.0
27,992 - Rru_B0029 0.32 -2.4
27,992 - Rru_B0029 0.32 -2.0
27,992 - Rru_B0029 0.32 -1.9
27,992 - Rru_B0029 0.32 -2.2
27,992 - Rru_B0029 0.32 -0.0
27,992 - Rru_B0029 0.32 -0.0
27,992 - Rru_B0029 0.32 -1.6
28,106 + Rru_B0029 0.43 -1.6
28,168 + Rru_B0029 0.49 -1.5
28,260 + Rru_B0029 0.59 -0.4
28,260 + Rru_B0029 0.59 -0.0
28,260 + Rru_B0029 0.59 -0.2
28,365 + Rru_B0029 0.69 -0.4
28,366 - Rru_B0029 0.70 -0.5
28,366 - Rru_B0029 0.70 -2.3
28,395 + Rru_B0029 0.72 -1.2
28,395 + Rru_B0029 0.72 -1.0
28,531 + Rru_B0029 0.86 -0.0
28,678 - -2.2
28,678 - -0.0
28,748 - -0.4
28,754 + -1.9
28,758 + -1.0
28,758 + -1.6
28,759 - -2.1
28,772 + -0.5
28,772 + -1.6
28,773 - -1.4
28,788 + -1.6
28,788 + -1.0
28,821 + -0.0
28,920 + -0.0
28,921 - -1.0
28,990 + -0.0
28,991 - +0.3
29,095 + -0.0
29,095 + -0.0
29,096 - -0.0
29,096 - -0.8
29,096 - -3.3
29,096 - -4.2
29,194 + Rru_B0030 0.15 -0.0
29,194 + Rru_B0030 0.15 -1.5
29,194 + Rru_B0030 0.15 -0.0
29,239 + Rru_B0030 0.18 -0.8
29,239 + Rru_B0030 0.18 -0.0
29,239 + Rru_B0030 0.18 -0.0
29,239 + Rru_B0030 0.18 -0.0
29,239 + Rru_B0030 0.18 -0.0
29,239 + Rru_B0030 0.18 -1.0
29,240 - Rru_B0030 0.18 +1.0
29,240 - Rru_B0030 0.18 -0.0
29,252 + Rru_B0030 0.19 -1.6
29,252 + Rru_B0030 0.19 -0.0
29,252 + Rru_B0030 0.19 -0.0
29,253 - Rru_B0030 0.19 -1.6
29,361 - Rru_B0030 0.27 -0.0
29,653 - Rru_B0030 0.48 -2.3
29,690 + Rru_B0030 0.50 -0.3
29,731 + Rru_B0030 0.53 -0.0
29,731 + Rru_B0030 0.53 -1.0
29,731 + Rru_B0030 0.53 -1.2
29,732 - Rru_B0030 0.53 -0.4
29,732 - Rru_B0030 0.53 -1.3
29,732 - Rru_B0030 0.53 -1.5
29,737 + Rru_B0030 0.54 -0.0
29,737 + Rru_B0030 0.54 -0.0
29,737 + Rru_B0030 0.54 -0.0
29,737 + Rru_B0030 0.54 -0.0
29,738 - Rru_B0030 0.54 -0.0
29,738 - Rru_B0030 0.54 -0.8
29,738 - Rru_B0030 0.54 -1.4
29,738 - Rru_B0030 0.54 -1.0
29,738 - Rru_B0030 0.54 -0.0
29,738 - Rru_B0030 0.54 -2.6
29,738 - Rru_B0030 0.54 -1.2
29,738 - Rru_B0030 0.54 -2.3
29,738 - Rru_B0030 0.54 -0.0
29,738 - Rru_B0030 0.54 -1.0
29,738 - Rru_B0030 0.54 -0.0
29,840 + Rru_B0030 0.61 -1.6
29,854 + Rru_B0030 0.62 -0.3
29,854 + Rru_B0030 0.62 +0.3
29,855 - Rru_B0030 0.62 -1.4
29,855 - Rru_B0030 0.62 -0.0
29,855 - Rru_B0030 0.62 -0.0
29,855 - Rru_B0030 0.62 -1.0
29,855 - Rru_B0030 0.62 -2.3
29,855 - Rru_B0030 0.62 -0.0
29,855 - Rru_B0030 0.62 -0.0
29,954 + Rru_B0030 0.69 -0.0
29,954 + Rru_B0030 0.69 -0.0
29,954 + Rru_B0030 0.69 -1.7
29,954 + Rru_B0030 0.69 -1.9
29,955 - Rru_B0030 0.70 -1.4
29,955 - Rru_B0030 0.70 -1.0
29,955 - Rru_B0030 0.70 -0.0
29,955 - Rru_B0030 0.70 -2.3
29,955 - Rru_B0030 0.70 -0.0
29,955 - Rru_B0030 0.70 -0.0
29,956 + Rru_B0030 0.70 -0.2
29,956 + Rru_B0030 0.70 -0.0
29,956 + Rru_B0030 0.70 -0.0
29,956 + Rru_B0030 0.70 -1.4
29,956 + Rru_B0030 0.70 -0.0
29,956 + Rru_B0030 0.70 -0.3
29,957 - Rru_B0030 0.70 -0.0
29,957 - Rru_B0030 0.70 -0.2
29,957 - Rru_B0030 0.70 -2.0
29,957 - Rru_B0030 0.70 -0.0
29,957 - Rru_B0030 0.70 -0.0
29,957 - Rru_B0030 0.70 -2.0
29,957 - Rru_B0030 0.70 -0.0
30,025 + Rru_B0030 0.75 -1.3
30,026 - Rru_B0030 0.75 -1.0
30,071 + Rru_B0030 0.78 -3.6
30,071 + Rru_B0030 0.78 -1.0
30,083 - Rru_B0030 0.79 -0.0
30,113 + Rru_B0030 0.81 -1.1
30,114 - Rru_B0030 0.81 -1.7
30,114 - Rru_B0030 0.81 -0.5
30,150 - Rru_B0030 0.84 -1.0
30,151 + Rru_B0030 0.84 +0.6
30,151 + Rru_B0030 0.84 -1.1
30,151 + Rru_B0030 0.84 -1.2
30,151 + Rru_B0030 0.84 -0.0
30,152 - Rru_B0030 0.84 -1.0
30,152 - Rru_B0030 0.84 -0.0
30,174 + Rru_B0030 0.85 -1.8
30,174 + Rru_B0030 0.85 -2.7
30,174 + Rru_B0030 0.85 -0.0
30,175 - Rru_B0030 0.85 -1.0
30,175 - Rru_B0030 0.85 -1.2
30,208 + Rru_B0030 0.88 -1.3
30,208 + Rru_B0030 0.88 -0.0
30,209 - Rru_B0030 0.88 -1.5
30,209 - Rru_B0030 0.88 -3.4
30,211 + Rru_B0030 0.88 -0.6
30,211 + Rru_B0030 0.88 -1.5
30,211 + Rru_B0030 0.88 -0.0
30,211 + Rru_B0030 0.88 -2.8
30,211 + Rru_B0030 0.88 -0.0
30,211 + Rru_B0030 0.88 -1.4
30,211 + Rru_B0030 0.88 -2.1
30,212 - Rru_B0030 0.88 -1.3
30,277 + -0.0
30,277 + -0.0
30,278 - -1.7
30,325 + -0.0
30,337 + -0.4
30,337 + -0.0
30,369 - -1.0
30,369 - -0.0
30,369 - -1.2
30,371 + -2.8
30,385 - -0.0
30,432 + -0.0
30,432 + -0.0
30,483 + -0.4
30,483 + -0.0
30,484 - -0.0
30,484 - -0.0
30,484 - -2.0
30,677 + Rru_B0031 0.14 -0.4
30,677 + Rru_B0031 0.14 -0.7
30,677 + Rru_B0031 0.14 -1.2
30,677 + Rru_B0031 0.14 -0.6
30,677 + Rru_B0031 0.14 -1.0
30,678 - Rru_B0031 0.14 -2.6
30,954 + Rru_B0031 0.32 -1.0
30,955 - Rru_B0031 0.32 -1.0
30,955 - Rru_B0031 0.32 -2.0
31,102 + Rru_B0031 0.42 -3.1
31,102 + Rru_B0031 0.42 -0.0
31,103 - Rru_B0031 0.42 -0.0
31,103 - Rru_B0031 0.42 -0.0
31,131 + Rru_B0031 0.44 -0.0
31,131 + Rru_B0031 0.44 -1.9
31,131 + Rru_B0031 0.44 -1.5
31,132 - Rru_B0031 0.44 -2.0
31,132 - Rru_B0031 0.44 -1.3
31,132 - Rru_B0031 0.44 -2.6
31,291 - Rru_B0031 0.54 -0.0
31,291 - Rru_B0031 0.54 -0.0
31,317 + Rru_B0031 0.56 -0.0
31,318 - Rru_B0031 0.56 -0.8
31,318 - Rru_B0031 0.56 -0.0
31,332 + Rru_B0031 0.57 -0.0
31,332 + Rru_B0031 0.57 +2.3
31,332 + Rru_B0031 0.57 -0.0
31,332 + Rru_B0031 0.57 -1.0
31,332 + Rru_B0031 0.57 -0.0
31,332 + Rru_B0031 0.57 -0.0
31,332 + Rru_B0031 0.57 -0.0

Or see this region's nucleotide sequence