Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26345

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26340 and BWI76_RS26345 overlap by 4 nucleotidesBWI76_RS26345 and BWI76_RS26350 are separated by 60 nucleotides BWI76_RS26340: BWI76_RS26340 - branched-chain amino acid ABC transporter permease, at 5,452,093 to 5,453,373 _RS26340 BWI76_RS26345: BWI76_RS26345 - branched-chain amino acid ABC transporter permease LivH, at 5,453,370 to 5,454,296 _RS26345 BWI76_RS26350: BWI76_RS26350 - branched chain amino acid ABC transporter substrate-binding protein, at 5,454,357 to 5,455,466 _RS26350 Position (kb) 5453 5454 5455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5452.518 kb on - strand, within BWI76_RS26340at 5452.548 kb on + strandat 5452.574 kb on + strand, within BWI76_RS26340at 5452.712 kb on - strand, within BWI76_RS26340at 5452.712 kb on - strand, within BWI76_RS26340at 5452.844 kb on + strand, within BWI76_RS26340at 5452.885 kb on - strand, within BWI76_RS26340at 5452.951 kb on + strand, within BWI76_RS26340at 5452.992 kb on + strand, within BWI76_RS26340at 5453.083 kb on - strand, within BWI76_RS26340at 5453.341 kb on + strandat 5453.394 kb on + strandat 5453.556 kb on - strand, within BWI76_RS26345at 5453.622 kb on - strand, within BWI76_RS26345at 5453.889 kb on - strand, within BWI76_RS26345at 5453.955 kb on + strand, within BWI76_RS26345at 5453.973 kb on - strand, within BWI76_RS26345at 5454.161 kb on - strand, within BWI76_RS26345at 5454.243 kb on - strandat 5454.253 kb on - strandat 5454.292 kb on + strandat 5454.292 kb on + strandat 5454.370 kb on + strandat 5454.609 kb on + strand, within BWI76_RS26350at 5454.639 kb on + strand, within BWI76_RS26350at 5454.691 kb on + strand, within BWI76_RS26350at 5454.691 kb on + strand, within BWI76_RS26350at 5454.691 kb on + strand, within BWI76_RS26350at 5454.711 kb on + strand, within BWI76_RS26350at 5454.837 kb on + strand, within BWI76_RS26350at 5454.926 kb on - strand, within BWI76_RS26350at 5455.090 kb on - strand, within BWI76_RS26350at 5455.170 kb on - strand, within BWI76_RS26350at 5455.229 kb on + strand, within BWI76_RS26350at 5455.248 kb on + strand, within BWI76_RS26350

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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5,452,518 - BWI76_RS26340 0.33 -0.3
5,452,548 + +0.4
5,452,574 + BWI76_RS26340 0.38 +0.5
5,452,712 - BWI76_RS26340 0.48 +0.5
5,452,712 - BWI76_RS26340 0.48 -2.6
5,452,844 + BWI76_RS26340 0.59 +0.5
5,452,885 - BWI76_RS26340 0.62 -0.9
5,452,951 + BWI76_RS26340 0.67 +0.8
5,452,992 + BWI76_RS26340 0.70 +2.8
5,453,083 - BWI76_RS26340 0.77 +1.7
5,453,341 + -0.7
5,453,394 + -0.7
5,453,556 - BWI76_RS26345 0.20 -0.4
5,453,622 - BWI76_RS26345 0.27 +1.8
5,453,889 - BWI76_RS26345 0.56 -1.8
5,453,955 + BWI76_RS26345 0.63 -1.9
5,453,973 - BWI76_RS26345 0.65 +1.2
5,454,161 - BWI76_RS26345 0.85 +2.4
5,454,243 - +0.4
5,454,253 - +1.3
5,454,292 + -1.0
5,454,292 + +1.6
5,454,370 + -1.6
5,454,609 + BWI76_RS26350 0.23 +0.4
5,454,639 + BWI76_RS26350 0.25 +1.4
5,454,691 + BWI76_RS26350 0.30 -1.6
5,454,691 + BWI76_RS26350 0.30 -1.2
5,454,691 + BWI76_RS26350 0.30 -2.8
5,454,711 + BWI76_RS26350 0.32 +1.0
5,454,837 + BWI76_RS26350 0.43 +0.2
5,454,926 - BWI76_RS26350 0.51 -0.1
5,455,090 - BWI76_RS26350 0.66 +2.4
5,455,170 - BWI76_RS26350 0.73 +0.7
5,455,229 + BWI76_RS26350 0.79 -2.4
5,455,248 + BWI76_RS26350 0.80 -0.4

Or see this region's nucleotide sequence