Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22365

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22360 and BWI76_RS22365 overlap by 4 nucleotidesBWI76_RS22365 and BWI76_RS22370 are separated by 258 nucleotides BWI76_RS22360: BWI76_RS22360 - hydrogenase formation protein HypD, at 4,659,466 to 4,660,587 _RS22360 BWI76_RS22365: BWI76_RS22365 - hydrogenase expression/formation protein HypE, at 4,660,584 to 4,661,594 _RS22365 BWI76_RS22370: BWI76_RS22370 - transcriptional regulator FhlA, at 4,661,853 to 4,663,925 _RS22370 Position (kb) 4660 4661 4662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4659.936 kb on - strand, within BWI76_RS22360at 4660.068 kb on + strand, within BWI76_RS22360at 4660.101 kb on - strand, within BWI76_RS22360at 4660.135 kb on - strand, within BWI76_RS22360at 4660.196 kb on - strand, within BWI76_RS22360at 4660.407 kb on + strand, within BWI76_RS22360at 4660.615 kb on - strandat 4660.678 kb on - strandat 4661.187 kb on + strand, within BWI76_RS22365at 4661.235 kb on + strand, within BWI76_RS22365at 4661.416 kb on - strand, within BWI76_RS22365at 4661.524 kb on + strandat 4661.639 kb on + strandat 4661.653 kb on - strandat 4662.124 kb on - strand, within BWI76_RS22370at 4662.147 kb on - strand, within BWI76_RS22370at 4662.375 kb on - strand, within BWI76_RS22370at 4662.433 kb on + strand, within BWI76_RS22370at 4662.439 kb on - strand, within BWI76_RS22370at 4662.523 kb on + strand, within BWI76_RS22370at 4662.531 kb on - strand, within BWI76_RS22370at 4662.531 kb on - strand, within BWI76_RS22370at 4662.560 kb on + strand, within BWI76_RS22370

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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4,659,936 - BWI76_RS22360 0.42 +0.2
4,660,068 + BWI76_RS22360 0.54 -0.3
4,660,101 - BWI76_RS22360 0.57 +1.6
4,660,135 - BWI76_RS22360 0.60 -0.7
4,660,196 - BWI76_RS22360 0.65 +1.0
4,660,407 + BWI76_RS22360 0.84 +2.1
4,660,615 - -0.2
4,660,678 - +0.9
4,661,187 + BWI76_RS22365 0.60 +0.3
4,661,235 + BWI76_RS22365 0.64 +0.0
4,661,416 - BWI76_RS22365 0.82 +1.8
4,661,524 + -0.3
4,661,639 + -1.1
4,661,653 - -0.7
4,662,124 - BWI76_RS22370 0.13 +0.9
4,662,147 - BWI76_RS22370 0.14 +0.3
4,662,375 - BWI76_RS22370 0.25 -0.7
4,662,433 + BWI76_RS22370 0.28 -1.6
4,662,439 - BWI76_RS22370 0.28 +0.3
4,662,523 + BWI76_RS22370 0.32 +0.4
4,662,531 - BWI76_RS22370 0.33 +0.8
4,662,531 - BWI76_RS22370 0.33 +1.7
4,662,560 + BWI76_RS22370 0.34 -3.3

Or see this region's nucleotide sequence