Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17350

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17345 and BWI76_RS17350 are separated by 10 nucleotidesBWI76_RS17350 and BWI76_RS17355 overlap by 4 nucleotides BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926 _RS17345 BWI76_RS17350: BWI76_RS17350 - DNA-binding response regulator, at 3,595,937 to 3,596,587 _RS17350 BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963 _RS17355 Position (kb) 3595 3596 3597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3595.056 kb on + strand, within BWI76_RS17345at 3595.157 kb on + strand, within BWI76_RS17345at 3595.701 kb on + strand, within BWI76_RS17345at 3596.379 kb on + strand, within BWI76_RS17350at 3596.476 kb on + strand, within BWI76_RS17350at 3596.924 kb on - strand, within BWI76_RS17355at 3597.047 kb on - strand, within BWI76_RS17355at 3597.338 kb on - strand, within BWI76_RS17355at 3597.382 kb on - strand, within BWI76_RS17355at 3597.444 kb on - strand, within BWI76_RS17355at 3597.522 kb on + strand, within BWI76_RS17355at 3597.537 kb on + strand, within BWI76_RS17355at 3597.545 kb on - strand, within BWI76_RS17355

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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3,595,056 + BWI76_RS17345 0.51 -2.5
3,595,157 + BWI76_RS17345 0.57 +0.6
3,595,701 + BWI76_RS17345 0.87 -3.8
3,596,379 + BWI76_RS17350 0.68 -1.3
3,596,476 + BWI76_RS17350 0.83 -0.9
3,596,924 - BWI76_RS17355 0.25 +1.2
3,597,047 - BWI76_RS17355 0.34 -0.1
3,597,338 - BWI76_RS17355 0.55 -1.3
3,597,382 - BWI76_RS17355 0.58 -0.3
3,597,444 - BWI76_RS17355 0.62 +0.1
3,597,522 + BWI76_RS17355 0.68 -0.5
3,597,537 + BWI76_RS17355 0.69 +0.7
3,597,545 - BWI76_RS17355 0.70 +0.3

Or see this region's nucleotide sequence