Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17340

Experiment: Thymine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17335 and BWI76_RS17340 are separated by 396 nucleotidesBWI76_RS17340 and BWI76_RS17345 are separated by 311 nucleotides BWI76_RS17335: BWI76_RS17335 - nitrate reductase subunit alpha, at 3,588,308 to 3,592,051 _RS17335 BWI76_RS17340: BWI76_RS17340 - NarK family nitrate/nitrite MFS transporter, at 3,592,448 to 3,593,836 _RS17340 BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926 _RS17345 Position (kb) 3592 3593 3594Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3591.522 kb on + strand, within BWI76_RS17335at 3591.916 kb on + strandat 3591.958 kb on + strandat 3592.001 kb on + strandat 3592.009 kb on - strandat 3592.054 kb on + strandat 3592.054 kb on + strandat 3592.061 kb on + strandat 3592.064 kb on + strandat 3592.069 kb on - strandat 3592.071 kb on + strandat 3592.079 kb on - strandat 3592.080 kb on - strandat 3592.087 kb on - strandat 3592.116 kb on + strandat 3592.286 kb on + strandat 3592.311 kb on + strandat 3592.319 kb on - strandat 3592.344 kb on + strandat 3592.461 kb on + strandat 3592.471 kb on - strandat 3592.471 kb on - strandat 3592.502 kb on - strandat 3592.505 kb on - strandat 3592.541 kb on + strandat 3592.549 kb on - strandat 3592.549 kb on - strandat 3592.549 kb on - strandat 3592.634 kb on + strand, within BWI76_RS17340at 3592.652 kb on + strand, within BWI76_RS17340at 3592.711 kb on + strand, within BWI76_RS17340at 3592.747 kb on + strand, within BWI76_RS17340at 3593.089 kb on - strand, within BWI76_RS17340at 3593.420 kb on - strand, within BWI76_RS17340at 3593.531 kb on - strand, within BWI76_RS17340at 3593.651 kb on - strandat 3593.832 kb on + strandat 3593.842 kb on + strandat 3594.265 kb on + strandat 3594.273 kb on - strandat 3594.325 kb on - strandat 3594.618 kb on + strand, within BWI76_RS17345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
remove
3,591,522 + BWI76_RS17335 0.86 -0.2
3,591,916 + -0.0
3,591,958 + -1.6
3,592,001 + +0.7
3,592,009 - +0.3
3,592,054 + +0.4
3,592,054 + -2.8
3,592,061 + -1.8
3,592,064 + +0.2
3,592,069 - +0.1
3,592,071 + -2.1
3,592,079 - +1.5
3,592,080 - +3.5
3,592,087 - -2.5
3,592,116 + +0.9
3,592,286 + -0.8
3,592,311 + +0.3
3,592,319 - -0.5
3,592,344 + -3.8
3,592,461 + +0.3
3,592,471 - -0.9
3,592,471 - -0.3
3,592,502 - -0.1
3,592,505 - -1.1
3,592,541 + -1.9
3,592,549 - +0.0
3,592,549 - +0.1
3,592,549 - -0.6
3,592,634 + BWI76_RS17340 0.13 -1.0
3,592,652 + BWI76_RS17340 0.15 -0.7
3,592,711 + BWI76_RS17340 0.19 -1.7
3,592,747 + BWI76_RS17340 0.22 -0.7
3,593,089 - BWI76_RS17340 0.46 -0.0
3,593,420 - BWI76_RS17340 0.70 -0.6
3,593,531 - BWI76_RS17340 0.78 +0.6
3,593,651 - -0.7
3,593,832 + -0.6
3,593,842 + +0.1
3,594,265 + -4.0
3,594,273 - +1.4
3,594,325 - +0.3
3,594,618 + BWI76_RS17345 0.26 -5.3

Or see this region's nucleotide sequence