Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16185

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16180 and BWI76_RS16185 are separated by 194 nucleotidesBWI76_RS16185 and BWI76_RS16190 are separated by 138 nucleotides BWI76_RS16180: BWI76_RS16180 - methylated-DNA--protein-cysteine methyltransferase, at 3,357,874 to 3,358,389 _RS16180 BWI76_RS16185: BWI76_RS16185 - transcriptional regulator FNR, at 3,358,584 to 3,359,336 _RS16185 BWI76_RS16190: BWI76_RS16190 - universal stress protein UspE, at 3,359,475 to 3,360,425 _RS16190 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -2 -1 0 1at 3357.603 kb on - strandat 3357.644 kb on + strandat 3357.686 kb on + strandat 3357.899 kb on - strandat 3358.274 kb on + strand, within BWI76_RS16180at 3358.344 kb on + strandat 3358.490 kb on - strandat 3358.519 kb on + strandat 3359.313 kb on + strandat 3359.397 kb on - strandat 3359.465 kb on - strandat 3359.465 kb on - strandat 3359.512 kb on - strandat 3359.640 kb on - strand, within BWI76_RS16190at 3359.640 kb on - strand, within BWI76_RS16190at 3359.753 kb on - strand, within BWI76_RS16190

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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3,357,603 - -0.2
3,357,644 + +0.4
3,357,686 + -1.3
3,357,899 - -1.4
3,358,274 + BWI76_RS16180 0.78 -1.6
3,358,344 + -0.5
3,358,490 - -0.6
3,358,519 + -1.2
3,359,313 + -1.6
3,359,397 - +0.5
3,359,465 - +0.3
3,359,465 - -0.5
3,359,512 - +0.0
3,359,640 - BWI76_RS16190 0.17 -2.3
3,359,640 - BWI76_RS16190 0.17 -0.7
3,359,753 - BWI76_RS16190 0.29 -1.4

Or see this region's nucleotide sequence