Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13800

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13795 and BWI76_RS13800 are separated by 383 nucleotidesBWI76_RS13800 and BWI76_RS13805 are separated by 255 nucleotides BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110 _RS13795 BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504 _RS13800 BWI76_RS13805: BWI76_RS13805 - inorganic diphosphatase, at 2,879,760 to 2,880,359 _RS13805 Position (kb) 2878 2879 2880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2877.808 kb on + strand, within BWI76_RS13795at 2877.808 kb on + strand, within BWI76_RS13795at 2877.816 kb on - strand, within BWI76_RS13795at 2877.816 kb on - strand, within BWI76_RS13795at 2878.274 kb on - strandat 2878.320 kb on + strandat 2878.322 kb on - strandat 2878.326 kb on + strandat 2878.419 kb on + strandat 2878.514 kb on + strandat 2878.537 kb on + strandat 2878.670 kb on + strand, within BWI76_RS13800at 2878.680 kb on + strand, within BWI76_RS13800at 2878.925 kb on + strand, within BWI76_RS13800at 2878.968 kb on + strand, within BWI76_RS13800at 2879.023 kb on + strand, within BWI76_RS13800at 2879.287 kb on - strand, within BWI76_RS13800at 2879.342 kb on - strand, within BWI76_RS13800at 2879.566 kb on - strandat 2880.291 kb on - strand, within BWI76_RS13805at 2880.291 kb on - strand, within BWI76_RS13805at 2880.417 kb on + strandat 2880.422 kb on + strandat 2880.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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2,877,808 + BWI76_RS13795 0.81 -3.5
2,877,808 + BWI76_RS13795 0.81 -4.2
2,877,816 - BWI76_RS13795 0.82 -2.1
2,877,816 - BWI76_RS13795 0.82 -1.1
2,878,274 - +4.7
2,878,320 + +0.2
2,878,322 - +1.0
2,878,326 + +0.5
2,878,419 + -2.0
2,878,514 + +0.1
2,878,537 + -0.5
2,878,670 + BWI76_RS13800 0.17 -3.5
2,878,680 + BWI76_RS13800 0.18 +0.9
2,878,925 + BWI76_RS13800 0.43 -0.3
2,878,968 + BWI76_RS13800 0.47 +0.2
2,879,023 + BWI76_RS13800 0.52 -2.5
2,879,287 - BWI76_RS13800 0.78 -1.0
2,879,342 - BWI76_RS13800 0.84 +1.6
2,879,566 - +1.2
2,880,291 - BWI76_RS13805 0.89 -0.5
2,880,291 - BWI76_RS13805 0.89 -1.7
2,880,417 + -0.8
2,880,422 + -2.5
2,880,450 + -0.9

Or see this region's nucleotide sequence