Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13670 and BWI76_RS13675 are separated by 189 nucleotides BWI76_RS13675 and BWI76_RS13680 are separated by 119 nucleotides BWI76_RS13680 and BWI76_RS13685 are separated by 4 nucleotides
BWI76_RS13670: BWI76_RS13670 - NarK family nitrate/nitrite MFS transporter, at 2,852,208 to 2,853,596
_RS13670
BWI76_RS13675: BWI76_RS13675 - TetR family transcriptional regulator, at 2,853,786 to 2,854,361
_RS13675
BWI76_RS13680: BWI76_RS13680 - methyl viologen resistance protein SmvA, at 2,854,481 to 2,855,971
_RS13680
BWI76_RS13685: BWI76_RS13685 - IclR family transcriptional regulator, at 2,855,976 to 2,856,773
_RS13685
Position (kb)
2854
2855
2856 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2853.601 kb on - strand at 2853.623 kb on - strand at 2853.689 kb on - strand at 2853.693 kb on + strand at 2853.701 kb on - strand at 2853.774 kb on + strand at 2853.781 kb on - strand at 2853.782 kb on - strand at 2853.782 kb on - strand at 2853.880 kb on + strand, within BWI76_RS13675 at 2853.888 kb on - strand, within BWI76_RS13675 at 2853.888 kb on - strand, within BWI76_RS13675 at 2853.931 kb on + strand, within BWI76_RS13675 at 2853.939 kb on - strand, within BWI76_RS13675 at 2853.955 kb on - strand, within BWI76_RS13675 at 2853.988 kb on - strand, within BWI76_RS13675 at 2853.996 kb on - strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.015 kb on + strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.023 kb on - strand, within BWI76_RS13675 at 2854.193 kb on - strand, within BWI76_RS13675 at 2854.219 kb on + strand, within BWI76_RS13675 at 2854.221 kb on - strand, within BWI76_RS13675 at 2854.483 kb on - strand at 2854.580 kb on - strand at 2854.586 kb on - strand at 2854.713 kb on - strand, within BWI76_RS13680 at 2855.146 kb on + strand, within BWI76_RS13680 at 2855.196 kb on - strand, within BWI76_RS13680 at 2855.310 kb on + strand, within BWI76_RS13680 at 2855.815 kb on + strand, within BWI76_RS13680 at 2856.585 kb on + strand, within BWI76_RS13685 at 2856.657 kb on - strand, within BWI76_RS13685
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 2,853,601 - +0.4 2,853,623 - +1.2 2,853,689 - -0.6 2,853,693 + -0.8 2,853,701 - -0.6 2,853,774 + -2.1 2,853,781 - +0.4 2,853,782 - +0.2 2,853,782 - +0.1 2,853,880 + BWI76_RS13675 0.16 -1.5 2,853,888 - BWI76_RS13675 0.18 -1.2 2,853,888 - BWI76_RS13675 0.18 -4.0 2,853,931 + BWI76_RS13675 0.25 -1.4 2,853,939 - BWI76_RS13675 0.27 +0.1 2,853,955 - BWI76_RS13675 0.29 +0.2 2,853,988 - BWI76_RS13675 0.35 -0.9 2,853,996 - BWI76_RS13675 0.36 -0.9 2,854,015 + BWI76_RS13675 0.40 -2.0 2,854,015 + BWI76_RS13675 0.40 +0.1 2,854,015 + BWI76_RS13675 0.40 -1.0 2,854,023 - BWI76_RS13675 0.41 +0.2 2,854,023 - BWI76_RS13675 0.41 -0.8 2,854,023 - BWI76_RS13675 0.41 -2.1 2,854,193 - BWI76_RS13675 0.71 -0.1 2,854,219 + BWI76_RS13675 0.75 +0.3 2,854,221 - BWI76_RS13675 0.76 -0.3 2,854,483 - +0.4 2,854,580 - +0.0 2,854,586 - +0.3 2,854,713 - BWI76_RS13680 0.16 +2.6 2,855,146 + BWI76_RS13680 0.45 +0.2 2,855,196 - BWI76_RS13680 0.48 +1.9 2,855,310 + BWI76_RS13680 0.56 -3.9 2,855,815 + BWI76_RS13680 0.89 +0.9 2,856,585 + BWI76_RS13685 0.76 -3.4 2,856,657 - BWI76_RS13685 0.85 +0.7
Or see this region's nucleotide sequence