Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13660

Experiment: Thymine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13650 and BWI76_RS13655 overlap by 4 nucleotidesBWI76_RS13655 and BWI76_RS13660 overlap by 1 nucleotidesBWI76_RS13660 and BWI76_RS13665 overlap by 4 nucleotides BWI76_RS13650: BWI76_RS13650 - respiratory nitrate reductase subunit gamma, at 2,845,457 to 2,846,137 _RS13650 BWI76_RS13655: BWI76_RS13655 - nitrate reductase molybdenum cofactor assembly chaperone, at 2,846,134 to 2,846,829 _RS13655 BWI76_RS13660: BWI76_RS13660 - nitrate reductase subunit beta, at 2,846,829 to 2,848,373 _RS13660 BWI76_RS13665: BWI76_RS13665 - nitrate reductase subunit alpha, at 2,848,370 to 2,852,110 _RS13665 Position (kb) 2846 2847 2848 2849Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2846.090 kb on + strandat 2846.096 kb on + strandat 2846.895 kb on - strandat 2847.167 kb on + strand, within BWI76_RS13660at 2847.288 kb on - strand, within BWI76_RS13660at 2847.946 kb on - strand, within BWI76_RS13660at 2848.318 kb on - strandat 2848.556 kb on + strandat 2849.102 kb on - strand, within BWI76_RS13665at 2849.318 kb on + strand, within BWI76_RS13665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
remove
2,846,090 + +0.4
2,846,096 + -0.3
2,846,895 - +2.4
2,847,167 + BWI76_RS13660 0.22 +0.3
2,847,288 - BWI76_RS13660 0.30 -0.4
2,847,946 - BWI76_RS13660 0.72 -2.8
2,848,318 - -0.1
2,848,556 + -1.2
2,849,102 - BWI76_RS13665 0.20 -0.3
2,849,318 + BWI76_RS13665 0.25 -0.2

Or see this region's nucleotide sequence