Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13095

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13090 and BWI76_RS13095 are separated by 11 nucleotidesBWI76_RS13095 and BWI76_RS13100 are separated by 7 nucleotidesBWI76_RS13100 and BWI76_RS13105 are separated by 12 nucleotides BWI76_RS13090: BWI76_RS13090 - phenylacetate-CoA oxygenase subunit PaaA, at 2,731,790 to 2,732,719 _RS13090 BWI76_RS13095: BWI76_RS13095 - phenylacetate-CoA oxygenase subunit PaaB, at 2,732,731 to 2,733,018 _RS13095 BWI76_RS13100: BWI76_RS13100 - phenylacetate-CoA oxygenase subunit PaaI, at 2,733,026 to 2,733,781 _RS13100 BWI76_RS13105: BWI76_RS13105 - phenylacetate-CoA oxygenase subunit PaaJ, at 2,733,794 to 2,734,291 _RS13105 Position (kb) 2732 2733 2734Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2731.806 kb on + strandat 2731.992 kb on - strand, within BWI76_RS13090at 2732.023 kb on - strand, within BWI76_RS13090at 2732.123 kb on + strand, within BWI76_RS13090at 2732.224 kb on - strand, within BWI76_RS13090at 2732.879 kb on + strand, within BWI76_RS13095at 2732.982 kb on + strand, within BWI76_RS13095at 2732.990 kb on - strandat 2733.007 kb on + strandat 2733.042 kb on - strandat 2733.362 kb on + strand, within BWI76_RS13100at 2733.402 kb on + strand, within BWI76_RS13100at 2733.453 kb on + strand, within BWI76_RS13100at 2733.541 kb on + strand, within BWI76_RS13100at 2733.580 kb on + strand, within BWI76_RS13100at 2733.580 kb on + strand, within BWI76_RS13100at 2733.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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2,731,806 + -1.2
2,731,992 - BWI76_RS13090 0.22 +0.1
2,732,023 - BWI76_RS13090 0.25 -0.4
2,732,123 + BWI76_RS13090 0.36 -1.5
2,732,224 - BWI76_RS13090 0.47 +1.6
2,732,879 + BWI76_RS13095 0.51 -3.8
2,732,982 + BWI76_RS13095 0.87 -3.5
2,732,990 - +0.1
2,733,007 + +1.4
2,733,042 - -1.7
2,733,362 + BWI76_RS13100 0.44 -4.0
2,733,402 + BWI76_RS13100 0.50 -2.0
2,733,453 + BWI76_RS13100 0.56 +0.7
2,733,541 + BWI76_RS13100 0.68 +0.0
2,733,580 + BWI76_RS13100 0.73 -1.9
2,733,580 + BWI76_RS13100 0.73 +0.1
2,733,765 - -0.9

Or see this region's nucleotide sequence