Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12085 and BWI76_RS12090 are separated by 11 nucleotides BWI76_RS12090 and BWI76_RS12095 are separated by 332 nucleotides BWI76_RS12095 and BWI76_RS12100 overlap by 4 nucleotides BWI76_RS12100 and BWI76_RS12105 overlap by 8 nucleotides
BWI76_RS12085: BWI76_RS12085 - regulatory protein CII from bacteriophage origin, at 2,538,780 to 2,539,316
_RS12085
BWI76_RS12090: BWI76_RS12090 - HNH endonuclease, at 2,539,328 to 2,539,831
_RS12090
BWI76_RS12095: BWI76_RS12095 - hypothetical protein, at 2,540,164 to 2,541,084
_RS12095
BWI76_RS12100: BWI76_RS12100 - replication protein P, at 2,541,081 to 2,541,824
_RS12100
BWI76_RS12105: BWI76_RS12105 - hypothetical protein, at 2,541,817 to 2,542,152
_RS12105
Position (kb)
2540
2541
2542 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2539.183 kb on + strand, within BWI76_RS12085 at 2539.188 kb on + strand, within BWI76_RS12085 at 2539.258 kb on + strand, within BWI76_RS12085 at 2539.273 kb on - strand at 2539.278 kb on + strand at 2539.302 kb on - strand at 2539.339 kb on - strand at 2539.339 kb on - strand at 2539.500 kb on - strand, within BWI76_RS12090 at 2539.558 kb on + strand, within BWI76_RS12090 at 2539.566 kb on - strand, within BWI76_RS12090 at 2539.723 kb on + strand at 2539.890 kb on - strand at 2539.908 kb on - strand at 2540.163 kb on - strand at 2540.163 kb on - strand at 2540.166 kb on + strand at 2540.505 kb on + strand, within BWI76_RS12095 at 2540.758 kb on + strand, within BWI76_RS12095 at 2540.766 kb on + strand, within BWI76_RS12095 at 2540.766 kb on + strand, within BWI76_RS12095 at 2540.774 kb on - strand, within BWI76_RS12095 at 2540.774 kb on - strand, within BWI76_RS12095 at 2540.842 kb on - strand, within BWI76_RS12095 at 2541.008 kb on + strand at 2541.008 kb on + strand at 2541.016 kb on - strand at 2541.104 kb on + strand at 2541.133 kb on - strand at 2541.426 kb on - strand, within BWI76_RS12100 at 2541.524 kb on + strand, within BWI76_RS12100 at 2541.532 kb on - strand, within BWI76_RS12100 at 2541.618 kb on + strand, within BWI76_RS12100 at 2541.626 kb on - strand, within BWI76_RS12100 at 2541.636 kb on - strand, within BWI76_RS12100 at 2541.709 kb on + strand, within BWI76_RS12100 at 2542.011 kb on - strand, within BWI76_RS12105 at 2542.050 kb on + strand, within BWI76_RS12105
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 2,539,183 + BWI76_RS12085 0.75 -0.3 2,539,188 + BWI76_RS12085 0.76 +0.3 2,539,258 + BWI76_RS12085 0.89 -2.6 2,539,273 - -0.6 2,539,278 + -3.1 2,539,302 - -2.6 2,539,339 - -0.8 2,539,339 - -0.9 2,539,500 - BWI76_RS12090 0.34 +0.1 2,539,558 + BWI76_RS12090 0.46 -0.2 2,539,566 - BWI76_RS12090 0.47 -1.8 2,539,723 + +0.1 2,539,890 - -1.6 2,539,908 - -0.2 2,540,163 - +0.6 2,540,163 - -1.6 2,540,166 + +0.8 2,540,505 + BWI76_RS12095 0.37 +0.8 2,540,758 + BWI76_RS12095 0.64 -0.6 2,540,766 + BWI76_RS12095 0.65 -0.7 2,540,766 + BWI76_RS12095 0.65 +0.7 2,540,774 - BWI76_RS12095 0.66 -0.8 2,540,774 - BWI76_RS12095 0.66 +0.2 2,540,842 - BWI76_RS12095 0.74 -3.2 2,541,008 + +1.0 2,541,008 + -0.9 2,541,016 - -0.2 2,541,104 + -0.0 2,541,133 - -2.6 2,541,426 - BWI76_RS12100 0.46 -0.4 2,541,524 + BWI76_RS12100 0.60 -0.9 2,541,532 - BWI76_RS12100 0.61 +0.4 2,541,618 + BWI76_RS12100 0.72 +0.1 2,541,626 - BWI76_RS12100 0.73 +1.5 2,541,636 - BWI76_RS12100 0.75 +0.1 2,541,709 + BWI76_RS12100 0.84 +0.1 2,542,011 - BWI76_RS12105 0.58 -0.4 2,542,050 + BWI76_RS12105 0.69 +0.8
Or see this region's nucleotide sequence