Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11775

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11765 and BWI76_RS11770 are separated by 134 nucleotidesBWI76_RS11770 and BWI76_RS11775 are separated by 91 nucleotidesBWI76_RS11775 and BWI76_RS11780 are separated by 148 nucleotidesBWI76_RS11780 and BWI76_RS11785 are separated by 130 nucleotides BWI76_RS11765: BWI76_RS11765 - bifunctional transporter/kinase, at 2,475,327 to 2,476,718 _RS11765 BWI76_RS11770: BWI76_RS11770 - hypothetical protein, at 2,476,853 to 2,477,443 _RS11770 BWI76_RS11775: BWI76_RS11775 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,477,535 to 2,478,296 _RS11775 BWI76_RS11780: BWI76_RS11780 - 2-deoxyglucose-6-phosphatase, at 2,478,445 to 2,479,113 _RS11780 BWI76_RS11785: BWI76_RS11785 - hypothetical protein, at 2,479,244 to 2,479,780 _RS11785 Position (kb) 2477 2478 2479Strain fitness (log2 ratio) -3 -2 -1 0 1at 2476.638 kb on + strandat 2476.643 kb on - strandat 2476.937 kb on + strand, within BWI76_RS11770at 2476.976 kb on - strand, within BWI76_RS11770at 2477.275 kb on - strand, within BWI76_RS11770at 2477.451 kb on + strandat 2477.575 kb on - strandat 2477.628 kb on - strand, within BWI76_RS11775at 2477.829 kb on - strand, within BWI76_RS11775at 2478.275 kb on + strandat 2478.283 kb on - strandat 2478.340 kb on + strandat 2478.613 kb on + strand, within BWI76_RS11780at 2478.926 kb on + strand, within BWI76_RS11780at 2479.249 kb on - strandat 2479.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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2,476,638 + -0.4
2,476,643 - -1.8
2,476,937 + BWI76_RS11770 0.14 -0.7
2,476,976 - BWI76_RS11770 0.21 -2.3
2,477,275 - BWI76_RS11770 0.71 -3.2
2,477,451 + +0.2
2,477,575 - +0.3
2,477,628 - BWI76_RS11775 0.12 +1.2
2,477,829 - BWI76_RS11775 0.39 +0.7
2,478,275 + +0.0
2,478,283 - -1.8
2,478,340 + +0.6
2,478,613 + BWI76_RS11780 0.25 -1.3
2,478,926 + BWI76_RS11780 0.72 -0.4
2,479,249 - +0.2
2,479,249 - +0.1

Or see this region's nucleotide sequence