Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10780

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10770 and BWI76_RS10775 overlap by 8 nucleotidesBWI76_RS10775 and BWI76_RS10780 overlap by 1 nucleotidesBWI76_RS10780 and BWI76_RS10785 are separated by 286 nucleotidesBWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotides BWI76_RS10770: BWI76_RS10770 - pyrimidine utilization protein C, at 2,273,743 to 2,274,135 _RS10770 BWI76_RS10775: BWI76_RS10775 - pyrimidine utilization protein B, at 2,274,128 to 2,274,838 _RS10775 BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929 _RS10780 BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854 _RS10785 BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246 _RS10790 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 2273.851 kb on - strand, within BWI76_RS10770at 2273.922 kb on + strand, within BWI76_RS10770at 2274.148 kb on + strandat 2274.172 kb on + strandat 2274.274 kb on - strand, within BWI76_RS10775at 2274.279 kb on + strand, within BWI76_RS10775at 2274.392 kb on + strand, within BWI76_RS10775at 2274.414 kb on + strand, within BWI76_RS10775at 2274.529 kb on + strand, within BWI76_RS10775at 2274.537 kb on - strand, within BWI76_RS10775at 2274.735 kb on - strand, within BWI76_RS10775at 2274.788 kb on + strandat 2274.796 kb on + strandat 2275.360 kb on + strand, within BWI76_RS10780at 2275.368 kb on - strand, within BWI76_RS10780at 2275.654 kb on - strand, within BWI76_RS10780at 2275.784 kb on + strand, within BWI76_RS10780at 2275.861 kb on + strandat 2275.864 kb on - strandat 2275.869 kb on - strandat 2275.984 kb on - strandat 2276.219 kb on + strandat 2276.219 kb on + strandat 2276.227 kb on - strandat 2276.227 kb on - strandat 2276.385 kb on + strand, within BWI76_RS10785at 2276.393 kb on - strand, within BWI76_RS10785at 2276.402 kb on - strand, within BWI76_RS10785at 2276.482 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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2,273,851 - BWI76_RS10770 0.27 -4.7
2,273,922 + BWI76_RS10770 0.46 -3.7
2,274,148 + -5.0
2,274,172 + -2.2
2,274,274 - BWI76_RS10775 0.21 -3.5
2,274,279 + BWI76_RS10775 0.21 -1.8
2,274,392 + BWI76_RS10775 0.37 -5.6
2,274,414 + BWI76_RS10775 0.40 -4.5
2,274,529 + BWI76_RS10775 0.56 -4.1
2,274,537 - BWI76_RS10775 0.58 -3.7
2,274,735 - BWI76_RS10775 0.85 -5.6
2,274,788 + -2.8
2,274,796 + -1.7
2,275,360 + BWI76_RS10780 0.48 -3.4
2,275,368 - BWI76_RS10780 0.49 -2.5
2,275,654 - BWI76_RS10780 0.75 -4.7
2,275,784 + BWI76_RS10780 0.87 -4.7
2,275,861 + -5.5
2,275,864 - -6.7
2,275,869 - -5.1
2,275,984 - -2.7
2,276,219 + +1.8
2,276,219 + +0.7
2,276,227 - +1.8
2,276,227 - +1.2
2,276,385 + BWI76_RS10785 0.26 +2.9
2,276,393 - BWI76_RS10785 0.28 +2.7
2,276,402 - BWI76_RS10785 0.29 +3.1
2,276,482 - BWI76_RS10785 0.42 +3.0
2,276,525 - BWI76_RS10785 0.48 +3.8
2,276,525 - BWI76_RS10785 0.48 +2.3
2,276,728 + BWI76_RS10785 0.80 +2.8
2,276,728 + BWI76_RS10785 0.80 +3.5

Or see this region's nucleotide sequence