Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08915

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08910 and BWI76_RS08915 are separated by 218 nucleotidesBWI76_RS08915 and BWI76_RS08920 are separated by 202 nucleotides BWI76_RS08910: BWI76_RS08910 - transketolase domain-containing protein, at 1,875,710 to 1,876,702 _RS08910 BWI76_RS08915: BWI76_RS08915 - ATP-dependent RNA helicase RhlE, at 1,876,921 to 1,878,273 _RS08915 BWI76_RS08920: BWI76_RS08920 - ATP-dependent DNA helicase DinG, at 1,878,476 to 1,880,620 _RS08920 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2at 1876.162 kb on + strand, within BWI76_RS08910at 1876.245 kb on - strand, within BWI76_RS08910at 1876.257 kb on + strand, within BWI76_RS08910at 1876.316 kb on - strand, within BWI76_RS08910at 1876.316 kb on - strand, within BWI76_RS08910at 1876.327 kb on + strand, within BWI76_RS08910at 1876.374 kb on + strand, within BWI76_RS08910at 1876.382 kb on - strand, within BWI76_RS08910at 1876.424 kb on - strand, within BWI76_RS08910at 1876.569 kb on - strand, within BWI76_RS08910at 1876.645 kb on - strandat 1876.977 kb on + strandat 1876.982 kb on + strandat 1876.985 kb on - strandat 1877.066 kb on - strand, within BWI76_RS08915at 1877.105 kb on + strand, within BWI76_RS08915at 1877.165 kb on - strand, within BWI76_RS08915at 1877.341 kb on - strandat 1877.349 kb on - strand, within BWI76_RS08915at 1877.440 kb on - strand, within BWI76_RS08915at 1877.478 kb on + strand, within BWI76_RS08915at 1877.556 kb on + strand, within BWI76_RS08915at 1877.564 kb on - strand, within BWI76_RS08915at 1878.281 kb on - strandat 1878.315 kb on + strandat 1878.794 kb on - strand, within BWI76_RS08920at 1878.794 kb on - strand, within BWI76_RS08920at 1878.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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1,876,162 + BWI76_RS08910 0.46 -0.7
1,876,245 - BWI76_RS08910 0.54 +0.1
1,876,257 + BWI76_RS08910 0.55 +0.4
1,876,316 - BWI76_RS08910 0.61 +0.6
1,876,316 - BWI76_RS08910 0.61 -0.0
1,876,327 + BWI76_RS08910 0.62 -0.9
1,876,374 + BWI76_RS08910 0.67 +1.3
1,876,382 - BWI76_RS08910 0.68 +1.8
1,876,424 - BWI76_RS08910 0.72 -0.9
1,876,569 - BWI76_RS08910 0.87 -1.3
1,876,645 - -0.2
1,876,977 + +0.4
1,876,982 + -1.5
1,876,985 - -2.3
1,877,066 - BWI76_RS08915 0.11 +0.2
1,877,105 + BWI76_RS08915 0.14 -0.0
1,877,165 - BWI76_RS08915 0.18 -0.2
1,877,341 - +0.2
1,877,349 - BWI76_RS08915 0.32 -0.5
1,877,440 - BWI76_RS08915 0.38 +0.1
1,877,478 + BWI76_RS08915 0.41 -1.8
1,877,556 + BWI76_RS08915 0.47 +0.1
1,877,564 - BWI76_RS08915 0.48 -2.3
1,878,281 - -0.8
1,878,315 + +2.4
1,878,794 - BWI76_RS08920 0.15 -0.3
1,878,794 - BWI76_RS08920 0.15 +1.4
1,878,970 + -0.1

Or see this region's nucleotide sequence