Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08500 and BWI76_RS08505 are separated by 15 nucleotides BWI76_RS08505 and BWI76_RS08510 overlap by 1 nucleotides BWI76_RS08510 and BWI76_RS08515 are separated by 149 nucleotides BWI76_RS08515 and BWI76_RS08520 are separated by 5 nucleotides BWI76_RS08520 and BWI76_RS08525 are separated by 3 nucleotides
BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818
_RS08500
BWI76_RS08505: BWI76_RS08505 - cytochrome bd-I oxidase subunit CydX, at 1,802,834 to 1,802,947
_RS08505
BWI76_RS08510: BWI76_RS08510 - cyd operon protein YbgE, at 1,802,947 to 1,803,237
_RS08510
BWI76_RS08515: BWI76_RS08515 - acyl-CoA thioesterase YbgC, at 1,803,387 to 1,803,791
_RS08515
BWI76_RS08520: BWI76_RS08520 - colicin transporter TolQ, at 1,803,797 to 1,804,480
_RS08520
BWI76_RS08525: BWI76_RS08525 - colicin transporter, at 1,804,484 to 1,804,912
_RS08525
Position (kb) 1803
1804 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1802.639 kb on + strand, within BWI76_RS08500 at 1802.734 kb on + strand at 1802.812 kb on + strand at 1802.965 kb on + strand at 1803.068 kb on + strand, within BWI76_RS08510 at 1803.086 kb on - strand, within BWI76_RS08510 at 1803.105 kb on + strand, within BWI76_RS08510 at 1803.125 kb on + strand, within BWI76_RS08510 at 1803.447 kb on + strand, within BWI76_RS08515 at 1803.764 kb on + strand at 1803.812 kb on - strand at 1803.823 kb on + strand at 1804.000 kb on - strand, within BWI76_RS08520 at 1804.358 kb on + strand, within BWI76_RS08520 at 1804.368 kb on + strand, within BWI76_RS08520 at 1804.421 kb on - strand at 1804.433 kb on + strand at 1804.486 kb on + strand at 1804.491 kb on + strand at 1804.546 kb on + strand, within BWI76_RS08525 at 1804.697 kb on + strand, within BWI76_RS08525 at 1804.753 kb on + strand, within BWI76_RS08525
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 1,802,639 + BWI76_RS08500 0.84 -2.4 1,802,734 + -0.9 1,802,812 + -1.0 1,802,965 + -0.5 1,803,068 + BWI76_RS08510 0.42 -0.7 1,803,086 - BWI76_RS08510 0.48 +0.6 1,803,105 + BWI76_RS08510 0.54 +1.8 1,803,125 + BWI76_RS08510 0.61 +0.2 1,803,447 + BWI76_RS08515 0.15 -1.0 1,803,764 + -1.0 1,803,812 - -0.9 1,803,823 + -4.6 1,804,000 - BWI76_RS08520 0.30 -3.7 1,804,358 + BWI76_RS08520 0.82 -0.4 1,804,368 + BWI76_RS08520 0.83 -1.8 1,804,421 - -1.2 1,804,433 + -4.9 1,804,486 + -1.9 1,804,491 + -1.8 1,804,546 + BWI76_RS08525 0.14 -1.6 1,804,697 + BWI76_RS08525 0.50 +1.1 1,804,753 + BWI76_RS08525 0.63 +1.6
Or see this region's nucleotide sequence