Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25430 and AO356_25435 are separated by 102 nucleotides AO356_25435 and AO356_25440 overlap by 4 nucleotides AO356_25440 and AO356_25445 are separated by 152 nucleotides AO356_25445 and AO356_25450 are separated by 36 nucleotides
AO356_25430: AO356_25430 - phosphatidylethanolamine-binding protein, at 5,750,933 to 5,751,472
_25430
AO356_25435: AO356_25435 - nodulation protein NolW, at 5,751,575 to 5,752,234
_25435
AO356_25440: AO356_25440 - histidine kinase, at 5,752,231 to 5,753,682
_25440
AO356_25445: AO356_25445 - hypothetical protein, at 5,753,835 to 5,754,116
_25445
AO356_25450: AO356_25450 - LysR family transcriptional regulator, at 5,754,153 to 5,755,094
_25450
Position (kb) 5752
5753
5754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5751.255 kb on + strand, within AO356_25430 at 5751.271 kb on - strand, within AO356_25430 at 5751.271 kb on - strand, within AO356_25430 at 5751.278 kb on - strand, within AO356_25430 at 5751.418 kb on - strand, within AO356_25430 at 5751.432 kb on - strand at 5751.510 kb on + strand at 5751.797 kb on + strand, within AO356_25435 at 5751.797 kb on + strand, within AO356_25435 at 5751.798 kb on - strand, within AO356_25435 at 5752.031 kb on + strand, within AO356_25435 at 5752.032 kb on - strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.181 kb on - strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.183 kb on - strand at 5752.495 kb on + strand, within AO356_25440 at 5752.516 kb on + strand, within AO356_25440 at 5752.517 kb on - strand, within AO356_25440 at 5752.642 kb on - strand, within AO356_25440 at 5753.067 kb on + strand, within AO356_25440 at 5753.068 kb on - strand, within AO356_25440 at 5753.462 kb on + strand, within AO356_25440 at 5753.462 kb on + strand, within AO356_25440 at 5753.462 kb on + strand, within AO356_25440 at 5753.463 kb on - strand, within AO356_25440 at 5753.561 kb on + strand at 5753.561 kb on + strand at 5753.561 kb on + strand at 5753.562 kb on - strand at 5753.562 kb on - strand at 5753.562 kb on - strand at 5753.831 kb on + strand at 5753.831 kb on + strand at 5753.832 kb on - strand at 5753.836 kb on + strand at 5753.836 kb on + strand at 5753.836 kb on + strand at 5753.837 kb on - strand at 5753.859 kb on + strand at 5753.859 kb on + strand at 5753.866 kb on + strand, within AO356_25445 at 5753.867 kb on - strand, within AO356_25445 at 5753.972 kb on + strand, within AO356_25445 at 5753.972 kb on + strand, within AO356_25445 at 5753.974 kb on + strand, within AO356_25445 at 5753.974 kb on + strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.976 kb on + strand, within AO356_25445 at 5754.054 kb on + strand, within AO356_25445 at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.153 kb on - strand at 5754.489 kb on + strand, within AO356_25450
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 5,751,255 + AO356_25430 0.60 -0.6 5,751,271 - AO356_25430 0.63 +0.8 5,751,271 - AO356_25430 0.63 +0.5 5,751,278 - AO356_25430 0.64 -1.2 5,751,418 - AO356_25430 0.90 +0.5 5,751,432 - +2.1 5,751,510 + -0.8 5,751,797 + AO356_25435 0.34 +0.4 5,751,797 + AO356_25435 0.34 +0.5 5,751,798 - AO356_25435 0.34 +0.5 5,752,031 + AO356_25435 0.69 +0.6 5,752,032 - AO356_25435 0.69 -2.2 5,752,077 + AO356_25435 0.76 -0.7 5,752,077 + AO356_25435 0.76 +0.4 5,752,077 + AO356_25435 0.76 -0.5 5,752,181 - -0.4 5,752,182 + -0.1 5,752,182 + +0.4 5,752,182 + +0.8 5,752,182 + +0.6 5,752,183 - +1.0 5,752,495 + AO356_25440 0.18 -0.2 5,752,516 + AO356_25440 0.20 +0.1 5,752,517 - AO356_25440 0.20 -1.0 5,752,642 - AO356_25440 0.28 -0.2 5,753,067 + AO356_25440 0.58 -1.0 5,753,068 - AO356_25440 0.58 -0.6 5,753,462 + AO356_25440 0.85 -0.5 5,753,462 + AO356_25440 0.85 +0.3 5,753,462 + AO356_25440 0.85 -0.8 5,753,463 - AO356_25440 0.85 +0.9 5,753,561 + +0.6 5,753,561 + +0.5 5,753,561 + +2.2 5,753,562 - +0.5 5,753,562 - +1.0 5,753,562 - -0.1 5,753,831 + +0.1 5,753,831 + +0.2 5,753,832 - -0.0 5,753,836 + +0.3 5,753,836 + -0.2 5,753,836 + -0.8 5,753,837 - +0.6 5,753,859 + -0.6 5,753,859 + -0.2 5,753,866 + AO356_25445 0.11 +1.2 5,753,867 - AO356_25445 0.11 -2.3 5,753,972 + AO356_25445 0.49 +0.3 5,753,972 + AO356_25445 0.49 +1.0 5,753,974 + AO356_25445 0.49 +0.6 5,753,974 + AO356_25445 0.49 +0.1 5,753,975 - AO356_25445 0.50 +0.1 5,753,975 - AO356_25445 0.50 +0.6 5,753,975 - AO356_25445 0.50 +1.0 5,753,975 - AO356_25445 0.50 +0.6 5,753,976 + AO356_25445 0.50 -0.9 5,754,054 + AO356_25445 0.78 +0.2 5,754,152 + +0.1 5,754,152 + -0.2 5,754,152 + -0.2 5,754,153 - -0.6 5,754,489 + AO356_25450 0.36 +0.4
Or see this region's nucleotide sequence