Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21990 and AO356_21995 are separated by 52 nucleotides AO356_21995 and AO356_22000 are separated by 303 nucleotides AO356_22000 and AO356_22005 overlap by 1 nucleotides
AO356_21990: AO356_21990 - LysR family transcriptional regulator, at 4,922,437 to 4,923,315
_21990
AO356_21995: AO356_21995 - hemerythrin, at 4,923,368 to 4,923,844
_21995
AO356_22000: AO356_22000 - plasmid stabilization protein, at 4,924,148 to 4,924,423
_22000
AO356_22005: AO356_22005 - CopG family transcriptional regulator, at 4,924,423 to 4,924,695
_22005
Position (kb)
4923
4924 Strain fitness (log2 ratio)
-1
0
1
2 at 4922.573 kb on + strand, within AO356_21990 at 4922.632 kb on + strand, within AO356_21990 at 4922.632 kb on + strand, within AO356_21990 at 4922.633 kb on - strand, within AO356_21990 at 4922.633 kb on - strand, within AO356_21990 at 4922.852 kb on - strand, within AO356_21990 at 4922.852 kb on - strand, within AO356_21990 at 4922.929 kb on + strand, within AO356_21990 at 4922.930 kb on - strand, within AO356_21990 at 4922.930 kb on - strand, within AO356_21990 at 4922.947 kb on + strand, within AO356_21990 at 4922.948 kb on - strand, within AO356_21990 at 4923.011 kb on - strand, within AO356_21990 at 4923.145 kb on + strand, within AO356_21990 at 4923.145 kb on + strand, within AO356_21990 at 4923.145 kb on + strand, within AO356_21990 at 4923.145 kb on + strand, within AO356_21990 at 4923.146 kb on - strand, within AO356_21990 at 4923.146 kb on - strand, within AO356_21990 at 4923.146 kb on - strand, within AO356_21990 at 4923.146 kb on - strand, within AO356_21990 at 4923.153 kb on + strand, within AO356_21990 at 4923.153 kb on + strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.364 kb on - strand at 4923.405 kb on + strand at 4923.633 kb on + strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.636 kb on + strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.686 kb on + strand, within AO356_21995 at 4923.900 kb on + strand at 4923.900 kb on + strand at 4923.984 kb on + strand at 4924.185 kb on + strand, within AO356_22000 at 4924.186 kb on - strand, within AO356_22000 at 4924.199 kb on + strand, within AO356_22000 at 4924.200 kb on - strand, within AO356_22000 at 4924.202 kb on + strand, within AO356_22000 at 4924.202 kb on + strand, within AO356_22000 at 4924.203 kb on - strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.374 kb on + strand, within AO356_22000 at 4924.375 kb on - strand, within AO356_22000 at 4924.375 kb on - strand, within AO356_22000 at 4924.385 kb on + strand, within AO356_22000 at 4924.386 kb on - strand, within AO356_22000 at 4924.561 kb on + strand, within AO356_22005 at 4924.562 kb on - strand, within AO356_22005 at 4924.573 kb on + strand, within AO356_22005 at 4924.573 kb on + strand, within AO356_22005 at 4924.574 kb on - strand, within AO356_22005 at 4924.574 kb on - strand, within AO356_22005 at 4924.765 kb on - strand at 4924.773 kb on - strand at 4924.788 kb on - strand at 4924.814 kb on + strand at 4924.821 kb on + strand at 4924.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 4,922,573 + AO356_21990 0.15 +0.2 4,922,632 + AO356_21990 0.22 +0.6 4,922,632 + AO356_21990 0.22 -0.1 4,922,633 - AO356_21990 0.22 -0.6 4,922,633 - AO356_21990 0.22 -0.3 4,922,852 - AO356_21990 0.47 +0.6 4,922,852 - AO356_21990 0.47 -1.3 4,922,929 + AO356_21990 0.56 -0.5 4,922,930 - AO356_21990 0.56 +0.6 4,922,930 - AO356_21990 0.56 -0.2 4,922,947 + AO356_21990 0.58 +0.1 4,922,948 - AO356_21990 0.58 +0.2 4,923,011 - AO356_21990 0.65 +0.7 4,923,145 + AO356_21990 0.81 +0.6 4,923,145 + AO356_21990 0.81 +0.6 4,923,145 + AO356_21990 0.81 -0.7 4,923,145 + AO356_21990 0.81 -0.5 4,923,146 - AO356_21990 0.81 +0.7 4,923,146 - AO356_21990 0.81 -0.2 4,923,146 - AO356_21990 0.81 +0.2 4,923,146 - AO356_21990 0.81 +0.1 4,923,153 + AO356_21990 0.81 +0.7 4,923,153 + AO356_21990 0.81 -0.1 4,923,154 - AO356_21990 0.82 +1.0 4,923,154 - AO356_21990 0.82 +0.1 4,923,154 - AO356_21990 0.82 +0.3 4,923,364 - +1.2 4,923,405 + -0.8 4,923,633 + AO356_21995 0.56 -0.4 4,923,634 - AO356_21995 0.56 +1.0 4,923,634 - AO356_21995 0.56 +0.3 4,923,634 - AO356_21995 0.56 +0.1 4,923,634 - AO356_21995 0.56 +0.5 4,923,634 - AO356_21995 0.56 -0.4 4,923,636 + AO356_21995 0.56 +0.3 4,923,637 - AO356_21995 0.56 +0.6 4,923,637 - AO356_21995 0.56 -0.5 4,923,637 - AO356_21995 0.56 -0.1 4,923,637 - AO356_21995 0.56 -0.5 4,923,637 - AO356_21995 0.56 +0.4 4,923,686 + AO356_21995 0.67 +0.4 4,923,900 + +1.1 4,923,900 + -0.5 4,923,984 + +1.4 4,924,185 + AO356_22000 0.13 +0.8 4,924,186 - AO356_22000 0.14 -0.3 4,924,199 + AO356_22000 0.18 +0.4 4,924,200 - AO356_22000 0.19 +0.3 4,924,202 + AO356_22000 0.20 -0.0 4,924,202 + AO356_22000 0.20 +1.6 4,924,203 - AO356_22000 0.20 +1.7 4,924,328 + AO356_22000 0.65 +0.3 4,924,328 + AO356_22000 0.65 +0.5 4,924,328 + AO356_22000 0.65 -0.0 4,924,328 + AO356_22000 0.65 +0.5 4,924,328 + AO356_22000 0.65 -0.2 4,924,328 + AO356_22000 0.65 +1.1 4,924,328 + AO356_22000 0.65 +1.1 4,924,328 + AO356_22000 0.65 +2.1 4,924,329 - AO356_22000 0.66 +0.3 4,924,329 - AO356_22000 0.66 +0.7 4,924,329 - AO356_22000 0.66 +1.2 4,924,374 + AO356_22000 0.82 -0.5 4,924,375 - AO356_22000 0.82 -0.3 4,924,375 - AO356_22000 0.82 +1.3 4,924,385 + AO356_22000 0.86 +0.3 4,924,386 - AO356_22000 0.86 -0.2 4,924,561 + AO356_22005 0.51 +0.1 4,924,562 - AO356_22005 0.51 +0.6 4,924,573 + AO356_22005 0.55 -0.5 4,924,573 + AO356_22005 0.55 -1.6 4,924,574 - AO356_22005 0.55 -0.4 4,924,574 - AO356_22005 0.55 +0.0 4,924,765 - +0.5 4,924,773 - -1.3 4,924,788 - -0.8 4,924,814 + -1.5 4,924,821 + -1.5 4,924,821 + +0.2
Or see this region's nucleotide sequence