Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13925

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13920 and AO356_13925 are separated by 320 nucleotides AO356_13920: AO356_13920 - electron transfer flavoprotein subunit beta, at 3,157,113 to 3,157,883 _13920 AO356_13925: AO356_13925 - acetyltransferase, at 3,158,204 to 3,158,770 _13925 Position (kb) 3158 3159Strain fitness (log2 ratio) -1 0 1at 3157.620 kb on + strand, within AO356_13920at 3157.620 kb on + strand, within AO356_13920at 3157.621 kb on - strand, within AO356_13920at 3157.621 kb on - strand, within AO356_13920at 3157.893 kb on + strandat 3157.893 kb on + strandat 3157.894 kb on - strandat 3157.894 kb on - strandat 3157.894 kb on - strandat 3157.936 kb on + strandat 3157.936 kb on + strandat 3157.936 kb on + strandat 3157.937 kb on - strandat 3158.002 kb on + strandat 3158.003 kb on - strandat 3158.199 kb on + strandat 3158.199 kb on + strandat 3158.200 kb on - strandat 3158.211 kb on + strandat 3158.211 kb on + strandat 3158.212 kb on - strandat 3158.212 kb on - strandat 3158.212 kb on - strandat 3158.291 kb on + strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.492 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.524 kb on + strand, within AO356_13925at 3158.524 kb on + strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.557 kb on + strand, within AO356_13925at 3158.557 kb on + strand, within AO356_13925at 3158.558 kb on - strand, within AO356_13925at 3158.642 kb on + strand, within AO356_13925at 3158.672 kb on + strand, within AO356_13925at 3158.673 kb on - strand, within AO356_13925at 3158.736 kb on + strandat 3158.737 kb on - strandat 3158.750 kb on + strandat 3158.751 kb on - strandat 3158.751 kb on - strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.824 kb on - strandat 3159.032 kb on + strandat 3159.087 kb on + strandat 3159.087 kb on + strandat 3159.174 kb on + strandat 3159.270 kb on - strandat 3159.311 kb on + strandat 3159.348 kb on - strandat 3159.348 kb on - strandat 3159.365 kb on + strandat 3159.412 kb on - strandat 3159.412 kb on - strandat 3159.519 kb on - strandat 3159.526 kb on + strandat 3159.527 kb on - strandat 3159.527 kb on - strandat 3159.527 kb on - strandat 3159.697 kb on - strandat 3159.697 kb on - strandat 3159.737 kb on + strandat 3159.737 kb on + strandat 3159.737 kb on + strandat 3159.737 kb on + strandat 3159.737 kb on + strandat 3159.738 kb on - strandat 3159.738 kb on - strandat 3159.738 kb on - strandat 3159.739 kb on + strandat 3159.739 kb on + strandat 3159.739 kb on + strandat 3159.740 kb on - strandat 3159.740 kb on - strandat 3159.740 kb on - strandat 3159.740 kb on - strandat 3159.761 kb on + strandat 3159.761 kb on + strandat 3159.761 kb on + strandat 3159.761 kb on + strandat 3159.762 kb on - strandat 3159.762 kb on - strandat 3159.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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3,157,620 + AO356_13920 0.66 -1.3
3,157,620 + AO356_13920 0.66 -0.2
3,157,621 - AO356_13920 0.66 +0.0
3,157,621 - AO356_13920 0.66 -1.3
3,157,893 + +0.7
3,157,893 + -0.1
3,157,894 - -0.3
3,157,894 - +0.2
3,157,894 - +0.5
3,157,936 + +0.6
3,157,936 + -0.5
3,157,936 + +0.3
3,157,937 - -0.1
3,158,002 + -1.2
3,158,003 - +0.1
3,158,199 + +0.1
3,158,199 + +0.2
3,158,200 - +0.1
3,158,211 + -0.5
3,158,211 + +0.0
3,158,212 - +0.5
3,158,212 - +1.2
3,158,212 - -0.3
3,158,291 + AO356_13925 0.15 -1.0
3,158,292 - AO356_13925 0.16 -0.3
3,158,292 - AO356_13925 0.16 -0.6
3,158,292 - AO356_13925 0.16 +0.4
3,158,292 - AO356_13925 0.16 -0.4
3,158,292 - AO356_13925 0.16 -0.2
3,158,435 + AO356_13925 0.41 +0.5
3,158,435 + AO356_13925 0.41 -0.5
3,158,435 + AO356_13925 0.41 +0.0
3,158,435 + AO356_13925 0.41 -0.4
3,158,435 + AO356_13925 0.41 +0.2
3,158,435 + AO356_13925 0.41 +0.1
3,158,436 - AO356_13925 0.41 -0.5
3,158,436 - AO356_13925 0.41 +0.8
3,158,436 - AO356_13925 0.41 +0.3
3,158,436 - AO356_13925 0.41 -0.6
3,158,436 - AO356_13925 0.41 -0.4
3,158,436 - AO356_13925 0.41 -0.4
3,158,492 + AO356_13925 0.51 -0.1
3,158,522 + AO356_13925 0.56 +0.3
3,158,522 + AO356_13925 0.56 -0.4
3,158,522 + AO356_13925 0.56 -0.4
3,158,522 + AO356_13925 0.56 +0.2
3,158,522 + AO356_13925 0.56 -0.5
3,158,522 + AO356_13925 0.56 -0.2
3,158,522 + AO356_13925 0.56 -0.3
3,158,523 - AO356_13925 0.56 -0.2
3,158,523 - AO356_13925 0.56 +0.4
3,158,523 - AO356_13925 0.56 +0.2
3,158,523 - AO356_13925 0.56 -0.2
3,158,524 + AO356_13925 0.56 -1.0
3,158,524 + AO356_13925 0.56 +0.4
3,158,525 - AO356_13925 0.57 +0.1
3,158,525 - AO356_13925 0.57 -1.2
3,158,525 - AO356_13925 0.57 +0.3
3,158,525 - AO356_13925 0.57 +0.8
3,158,525 - AO356_13925 0.57 -0.3
3,158,557 + AO356_13925 0.62 +0.3
3,158,557 + AO356_13925 0.62 -0.3
3,158,558 - AO356_13925 0.62 +0.5
3,158,642 + AO356_13925 0.77 +0.0
3,158,672 + AO356_13925 0.83 -0.8
3,158,673 - AO356_13925 0.83 -0.0
3,158,736 + -0.1
3,158,737 - -0.4
3,158,750 + -0.2
3,158,751 - +0.3
3,158,751 - +0.5
3,158,823 + -0.1
3,158,823 + +0.6
3,158,823 + +0.6
3,158,823 + +0.2
3,158,824 - -0.1
3,159,032 + -0.1
3,159,087 + -0.2
3,159,087 + -1.4
3,159,174 + +0.3
3,159,270 - +0.4
3,159,311 + +0.5
3,159,348 - +1.1
3,159,348 - -0.9
3,159,365 + +0.0
3,159,412 - -0.4
3,159,412 - -0.3
3,159,519 - +0.5
3,159,526 + -0.4
3,159,527 - -0.2
3,159,527 - +0.0
3,159,527 - +0.7
3,159,697 - -0.2
3,159,697 - +0.8
3,159,737 + -0.1
3,159,737 + +0.1
3,159,737 + -0.3
3,159,737 + +0.4
3,159,737 + -1.5
3,159,738 - -0.8
3,159,738 - +0.9
3,159,738 - -0.1
3,159,739 + -0.9
3,159,739 + -0.1
3,159,739 + -0.6
3,159,740 - -0.1
3,159,740 - -0.8
3,159,740 - -0.1
3,159,740 - -0.4
3,159,761 + -0.1
3,159,761 + +1.0
3,159,761 + +0.6
3,159,761 + -0.3
3,159,762 - +0.8
3,159,762 - +1.0
3,159,762 - +0.3

Or see this region's nucleotide sequence