Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02650 and AO356_02655 are separated by 128 nucleotides AO356_02655 and AO356_02660 overlap by 4 nucleotides AO356_02660 and AO356_02665 are separated by 263 nucleotides AO356_02665 and AO356_02670 are separated by 79 nucleotides
AO356_02650: AO356_02650 - type III secretion system protein PrgH, at 582,455 to 583,633
_02650
AO356_02655: AO356_02655 - invasion protein IagB, at 583,762 to 584,226
_02655
AO356_02660: AO356_02660 - invasion protein regulator, at 584,223 to 585,482
_02660
AO356_02665: AO356_02665 - hypothetical protein, at 585,746 to 586,003
_02665
AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189
_02670
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 583.317 kb on + strand, within AO356_02650 at 583.317 kb on + strand, within AO356_02650 at 583.317 kb on + strand, within AO356_02650 at 583.317 kb on + strand, within AO356_02650 at 583.317 kb on + strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.318 kb on - strand, within AO356_02650 at 583.671 kb on + strand at 583.671 kb on + strand at 583.672 kb on - strand at 583.672 kb on - strand at 583.859 kb on + strand, within AO356_02655 at 583.859 kb on + strand, within AO356_02655 at 583.881 kb on + strand, within AO356_02655 at 583.881 kb on + strand, within AO356_02655 at 583.882 kb on - strand, within AO356_02655 at 583.882 kb on - strand, within AO356_02655 at 583.882 kb on - strand, within AO356_02655 at 583.882 kb on - strand, within AO356_02655 at 583.883 kb on + strand, within AO356_02655 at 583.883 kb on + strand, within AO356_02655 at 583.884 kb on - strand, within AO356_02655 at 584.384 kb on - strand, within AO356_02660 at 584.466 kb on - strand, within AO356_02660 at 584.722 kb on + strand, within AO356_02660 at 584.740 kb on + strand, within AO356_02660 at 584.778 kb on + strand, within AO356_02660 at 584.779 kb on - strand, within AO356_02660 at 584.807 kb on + strand, within AO356_02660 at 584.808 kb on - strand, within AO356_02660 at 585.151 kb on - strand, within AO356_02660 at 585.212 kb on - strand, within AO356_02660 at 585.247 kb on + strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.251 kb on + strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.357 kb on + strand at 585.358 kb on - strand at 585.482 kb on + strand at 585.482 kb on + strand at 585.483 kb on - strand at 585.498 kb on + strand at 585.568 kb on + strand at 585.569 kb on - strand at 585.608 kb on + strand at 585.666 kb on + strand at 585.673 kb on + strand at 585.715 kb on - strand at 585.736 kb on + strand at 585.737 kb on - strand at 585.754 kb on + strand at 585.761 kb on + strand at 585.762 kb on - strand at 585.762 kb on - strand at 585.763 kb on + strand at 585.763 kb on + strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.785 kb on + strand, within AO356_02665 at 585.785 kb on + strand, within AO356_02665 at 585.786 kb on - strand, within AO356_02665 at 585.847 kb on + strand, within AO356_02665 at 585.848 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.947 kb on - strand, within AO356_02665 at 585.980 kb on - strand at 586.063 kb on - strand at 586.084 kb on + strand at 586.109 kb on + strand at 586.145 kb on + strand at 586.162 kb on + strand at 586.276 kb on - strand, within AO356_02670 at 586.276 kb on - strand, within AO356_02670 at 586.289 kb on - strand, within AO356_02670
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 583,317 + AO356_02650 0.73 -0.6 583,317 + AO356_02650 0.73 +0.5 583,317 + AO356_02650 0.73 -0.5 583,317 + AO356_02650 0.73 -0.2 583,317 + AO356_02650 0.73 +1.2 583,318 - AO356_02650 0.73 -0.5 583,318 - AO356_02650 0.73 -0.1 583,318 - AO356_02650 0.73 +0.7 583,318 - AO356_02650 0.73 -0.1 583,318 - AO356_02650 0.73 -0.3 583,318 - AO356_02650 0.73 +0.6 583,671 + +0.4 583,671 + -1.8 583,672 - +0.1 583,672 - +1.1 583,859 + AO356_02655 0.21 +0.3 583,859 + AO356_02655 0.21 +0.3 583,881 + AO356_02655 0.26 +0.8 583,881 + AO356_02655 0.26 -0.3 583,882 - AO356_02655 0.26 -0.6 583,882 - AO356_02655 0.26 -3.1 583,882 - AO356_02655 0.26 +0.0 583,882 - AO356_02655 0.26 -0.0 583,883 + AO356_02655 0.26 -0.2 583,883 + AO356_02655 0.26 -0.2 583,884 - AO356_02655 0.26 +0.0 584,384 - AO356_02660 0.13 +0.7 584,466 - AO356_02660 0.19 +0.3 584,722 + AO356_02660 0.40 +0.3 584,740 + AO356_02660 0.41 +0.3 584,778 + AO356_02660 0.44 +0.1 584,779 - AO356_02660 0.44 -0.2 584,807 + AO356_02660 0.46 -0.8 584,808 - AO356_02660 0.46 +2.3 585,151 - AO356_02660 0.74 -0.1 585,212 - AO356_02660 0.78 +0.1 585,247 + AO356_02660 0.81 +0.9 585,248 - AO356_02660 0.81 +0.3 585,248 - AO356_02660 0.81 +0.6 585,248 - AO356_02660 0.81 +0.2 585,251 + AO356_02660 0.82 +0.6 585,252 - AO356_02660 0.82 -0.3 585,252 - AO356_02660 0.82 +0.2 585,252 - AO356_02660 0.82 +0.2 585,357 + +0.3 585,358 - +0.6 585,482 + +0.2 585,482 + -0.1 585,483 - -0.2 585,498 + -1.1 585,568 + +1.2 585,569 - -0.2 585,608 + -0.5 585,666 + +1.0 585,673 + -0.1 585,715 - +0.5 585,736 + -0.0 585,737 - -0.6 585,754 + +1.4 585,761 + +0.1 585,762 - +0.2 585,762 - +0.7 585,763 + +1.2 585,763 + -0.3 585,764 - -0.4 585,764 - -0.2 585,764 - -0.4 585,764 - -0.2 585,785 + AO356_02665 0.15 -0.5 585,785 + AO356_02665 0.15 -0.7 585,786 - AO356_02665 0.16 +1.0 585,847 + AO356_02665 0.39 -1.9 585,848 - AO356_02665 0.40 +0.2 585,851 - AO356_02665 0.41 -0.4 585,851 - AO356_02665 0.41 -0.6 585,851 - AO356_02665 0.41 -0.8 585,851 - AO356_02665 0.41 +0.0 585,947 - AO356_02665 0.78 +0.3 585,980 - +0.2 586,063 - -0.2 586,084 + +0.0 586,109 + +1.1 586,145 + +0.4 586,162 + -0.2 586,276 - AO356_02670 0.17 -0.1 586,276 - AO356_02670 0.17 +0.0 586,289 - AO356_02670 0.19 +0.5
Or see this region's nucleotide sequence