Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02335 and AO356_02340 are separated by 101 nucleotides AO356_02340 and AO356_02345 are separated by 174 nucleotides
AO356_02335: AO356_02335 - hypothetical protein, at 506,257 to 506,694
_02335
AO356_02340: AO356_02340 - universal stress protein UspA, at 506,796 to 507,236
_02340
AO356_02345: AO356_02345 - ABC transporter ATP-binding protein, at 507,411 to 509,327
_02345
Position (kb) 506
507
508 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 505.796 kb on + strand at 505.849 kb on + strand at 505.890 kb on + strand at 505.914 kb on + strand at 505.914 kb on + strand at 505.933 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.999 kb on + strand at 506.028 kb on + strand at 506.028 kb on + strand at 506.029 kb on - strand at 506.150 kb on - strand at 506.150 kb on - strand at 506.157 kb on + strand at 506.324 kb on + strand, within AO356_02335 at 506.324 kb on + strand, within AO356_02335 at 506.324 kb on + strand, within AO356_02335 at 506.360 kb on + strand, within AO356_02335 at 506.360 kb on + strand, within AO356_02335 at 506.360 kb on + strand, within AO356_02335 at 506.502 kb on - strand, within AO356_02335 at 506.620 kb on + strand, within AO356_02335 at 506.620 kb on + strand, within AO356_02335 at 506.621 kb on - strand, within AO356_02335 at 506.653 kb on + strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.694 kb on + strand at 506.694 kb on + strand at 506.695 kb on - strand at 506.695 kb on - strand at 506.700 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.799 kb on + strand at 506.799 kb on + strand at 506.800 kb on - strand at 506.800 kb on - strand at 506.802 kb on + strand at 506.802 kb on + strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 507.061 kb on - strand, within AO356_02340 at 507.205 kb on + strand at 507.205 kb on + strand at 507.205 kb on + strand at 507.205 kb on + strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.214 kb on + strand at 507.214 kb on + strand at 507.214 kb on + strand at 507.215 kb on - strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.235 kb on - strand at 507.235 kb on - strand at 507.240 kb on + strand at 507.240 kb on + strand at 507.240 kb on + strand at 507.241 kb on - strand at 507.241 kb on - strand at 507.241 kb on - strand at 507.247 kb on - strand at 507.282 kb on - strand at 507.514 kb on + strand at 507.515 kb on - strand at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.778 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.177 kb on + strand, within AO356_02345 at 508.177 kb on + strand, within AO356_02345
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 505,796 + -0.4 505,849 + +0.8 505,890 + -0.0 505,914 + +0.1 505,914 + +1.9 505,933 + +0.2 505,972 + -0.3 505,972 + +0.6 505,972 + +0.4 505,972 + +0.4 505,972 + -0.3 505,973 - -0.3 505,973 - -0.1 505,999 + +0.2 506,028 + -0.1 506,028 + +0.6 506,029 - -0.5 506,150 - -0.3 506,150 - +0.6 506,157 + +0.4 506,324 + AO356_02335 0.15 -1.0 506,324 + AO356_02335 0.15 -2.0 506,324 + AO356_02335 0.15 -2.0 506,360 + AO356_02335 0.24 -1.3 506,360 + AO356_02335 0.24 -0.5 506,360 + AO356_02335 0.24 -1.6 506,502 - AO356_02335 0.56 -4.0 506,620 + AO356_02335 0.83 -2.1 506,620 + AO356_02335 0.83 -2.0 506,621 - AO356_02335 0.83 -1.5 506,653 + -1.5 506,654 - -0.7 506,654 - -0.9 506,654 - -0.0 506,654 - -1.6 506,654 - -1.5 506,654 - -1.4 506,654 - -1.6 506,694 + -2.0 506,694 + -1.2 506,695 - +0.2 506,695 - -0.6 506,700 + -1.5 506,761 + -0.4 506,761 + -2.2 506,761 + +0.5 506,761 + +0.5 506,761 + +0.1 506,761 + -0.3 506,761 + -0.6 506,761 + -0.6 506,761 + -0.0 506,762 - +0.0 506,762 - +1.1 506,762 - -0.6 506,762 - +0.7 506,762 - -0.1 506,765 + +0.7 506,765 + +0.2 506,765 + +0.4 506,765 + +0.9 506,765 + -0.7 506,799 + +0.5 506,799 + +0.5 506,800 - -0.1 506,800 - -0.5 506,802 + -0.9 506,802 + -1.4 506,803 - -0.3 506,803 - -0.6 506,803 - +0.5 506,803 - +0.4 506,803 - -0.3 507,061 - AO356_02340 0.60 +0.2 507,205 + +0.1 507,205 + -0.2 507,205 + -0.2 507,205 + +0.3 507,206 - -0.5 507,206 - +0.3 507,206 - +0.0 507,206 - +0.1 507,214 + +0.5 507,214 + -0.1 507,214 + +0.1 507,215 - -2.0 507,234 + -0.8 507,234 + +0.1 507,234 + -0.8 507,234 + -0.1 507,235 - +0.1 507,235 - +0.7 507,240 + +0.4 507,240 + +0.3 507,240 + -0.1 507,241 - -1.3 507,241 - +0.3 507,241 - +0.6 507,247 - +0.4 507,282 - -0.2 507,514 + +0.3 507,515 - -0.8 507,613 + AO356_02345 0.11 +0.3 507,613 + AO356_02345 0.11 -0.3 507,613 + AO356_02345 0.11 -1.1 507,613 + AO356_02345 0.11 -0.5 507,614 - AO356_02345 0.11 +0.1 507,614 - AO356_02345 0.11 -0.4 507,614 - AO356_02345 0.11 -0.7 507,778 + AO356_02345 0.19 -0.2 508,066 + AO356_02345 0.34 -0.1 508,066 + AO356_02345 0.34 +0.0 508,066 + AO356_02345 0.34 +0.5 508,177 + AO356_02345 0.40 +0.5 508,177 + AO356_02345 0.40 -0.3
Or see this region's nucleotide sequence