Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22440

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22435 and AO353_22440 are separated by 500 nucleotidesAO353_22440 and AO353_22445 are separated by 114 nucleotides AO353_22435: AO353_22435 - channel protein TolC, at 4,916,719 to 4,918,068 _22435 AO353_22440: AO353_22440 - LuxR family transcriptional regulator, at 4,918,569 to 4,919,285 _22440 AO353_22445: AO353_22445 - hypothetical protein, at 4,919,400 to 4,923,551 _22445 Position (kb) 4918 4919 4920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4917.583 kb on + strand, within AO353_22435at 4917.584 kb on - strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.616 kb on + strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.617 kb on - strand, within AO353_22435at 4917.649 kb on + strand, within AO353_22435at 4917.650 kb on - strand, within AO353_22435at 4917.763 kb on + strand, within AO353_22435at 4917.845 kb on + strand, within AO353_22435at 4917.863 kb on - strand, within AO353_22435at 4917.863 kb on - strand, within AO353_22435at 4917.887 kb on + strand, within AO353_22435at 4917.888 kb on - strand, within AO353_22435at 4917.888 kb on - strand, within AO353_22435at 4917.900 kb on - strand, within AO353_22435at 4917.900 kb on - strand, within AO353_22435at 4917.944 kb on - strandat 4917.944 kb on - strandat 4918.018 kb on - strandat 4918.162 kb on + strandat 4918.162 kb on + strandat 4918.162 kb on + strandat 4918.163 kb on - strandat 4918.163 kb on - strandat 4918.201 kb on - strandat 4918.319 kb on + strandat 4918.319 kb on + strandat 4918.411 kb on + strandat 4918.411 kb on + strandat 4918.411 kb on + strandat 4918.411 kb on + strandat 4918.412 kb on - strandat 4918.412 kb on - strandat 4918.412 kb on - strandat 4918.413 kb on + strandat 4918.413 kb on + strandat 4918.413 kb on + strandat 4918.413 kb on + strandat 4918.413 kb on + strandat 4918.414 kb on - strandat 4918.414 kb on - strandat 4918.414 kb on - strandat 4918.426 kb on + strandat 4918.427 kb on - strandat 4918.427 kb on - strandat 4918.543 kb on + strandat 4918.543 kb on + strandat 4918.544 kb on - strandat 4918.544 kb on - strandat 4918.544 kb on - strandat 4918.544 kb on - strandat 4918.544 kb on - strandat 4918.567 kb on + strandat 4918.568 kb on - strandat 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.695 kb on + strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.696 kb on - strand, within AO353_22440at 4918.697 kb on + strand, within AO353_22440at 4918.698 kb on - strand, within AO353_22440at 4918.839 kb on + strand, within AO353_22440at 4918.839 kb on + strand, within AO353_22440at 4918.840 kb on - strand, within AO353_22440at 4918.840 kb on - strand, within AO353_22440at 4918.840 kb on - strand, within AO353_22440at 4918.840 kb on - strand, within AO353_22440at 4918.941 kb on + strand, within AO353_22440at 4918.941 kb on + strand, within AO353_22440at 4918.941 kb on + strand, within AO353_22440at 4918.941 kb on + strand, within AO353_22440at 4918.942 kb on - strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.007 kb on + strand, within AO353_22440at 4919.008 kb on - strand, within AO353_22440at 4919.008 kb on - strand, within AO353_22440at 4919.008 kb on - strand, within AO353_22440at 4919.024 kb on + strand, within AO353_22440at 4919.024 kb on + strand, within AO353_22440at 4919.024 kb on + strand, within AO353_22440at 4919.025 kb on - strand, within AO353_22440at 4919.109 kb on + strand, within AO353_22440at 4919.109 kb on + strand, within AO353_22440at 4919.109 kb on + strand, within AO353_22440at 4919.109 kb on + strand, within AO353_22440at 4919.110 kb on - strand, within AO353_22440at 4919.110 kb on - strand, within AO353_22440at 4919.110 kb on - strand, within AO353_22440at 4919.110 kb on - strand, within AO353_22440at 4919.175 kb on + strand, within AO353_22440at 4919.175 kb on + strand, within AO353_22440at 4919.175 kb on + strand, within AO353_22440at 4919.175 kb on + strand, within AO353_22440at 4919.176 kb on - strand, within AO353_22440at 4919.217 kb on + strandat 4919.217 kb on + strandat 4919.217 kb on + strandat 4919.217 kb on + strandat 4919.217 kb on + strandat 4919.264 kb on + strandat 4919.264 kb on + strandat 4919.265 kb on - strandat 4919.331 kb on + strandat 4919.331 kb on + strandat 4919.332 kb on - strandat 4919.332 kb on - strandat 4919.332 kb on - strandat 4919.332 kb on - strandat 4919.364 kb on + strandat 4919.365 kb on - strandat 4919.398 kb on + strandat 4919.398 kb on + strandat 4919.398 kb on + strandat 4919.398 kb on + strandat 4919.399 kb on - strandat 4919.399 kb on - strandat 4919.461 kb on - strandat 4919.461 kb on - strandat 4919.461 kb on - strandat 4919.599 kb on + strandat 4919.599 kb on + strandat 4919.600 kb on - strandat 4919.600 kb on - strandat 4919.600 kb on - strandat 4919.669 kb on - strandat 4919.669 kb on - strandat 4919.720 kb on + strandat 4919.720 kb on + strandat 4919.720 kb on + strandat 4919.968 kb on + strand, within AO353_22445at 4919.971 kb on + strand, within AO353_22445at 4919.971 kb on + strand, within AO353_22445at 4919.971 kb on + strand, within AO353_22445at 4919.971 kb on + strand, within AO353_22445at 4919.971 kb on + strand, within AO353_22445at 4919.972 kb on - strand, within AO353_22445at 4919.972 kb on - strand, within AO353_22445at 4919.972 kb on - strand, within AO353_22445at 4919.980 kb on + strand, within AO353_22445at 4919.981 kb on - strand, within AO353_22445at 4919.983 kb on + strand, within AO353_22445at 4919.983 kb on + strand, within AO353_22445at 4919.983 kb on + strand, within AO353_22445at 4919.983 kb on + strand, within AO353_22445at 4919.983 kb on + strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4919.984 kb on - strand, within AO353_22445at 4920.030 kb on - strand, within AO353_22445at 4920.149 kb on + strandat 4920.150 kb on - strand, within AO353_22445at 4920.150 kb on - strand, within AO353_22445at 4920.150 kb on - strand, within AO353_22445at 4920.178 kb on + strand, within AO353_22445at 4920.178 kb on + strand, within AO353_22445at 4920.178 kb on + strand, within AO353_22445at 4920.178 kb on + strand, within AO353_22445at 4920.178 kb on + strand, within AO353_22445at 4920.179 kb on - strand, within AO353_22445at 4920.179 kb on - strand, within AO353_22445at 4920.201 kb on + strand, within AO353_22445at 4920.201 kb on + strand, within AO353_22445at 4920.201 kb on + strand, within AO353_22445

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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4,917,583 + AO353_22435 0.64 -0.6
4,917,584 - AO353_22435 0.64 -1.4
4,917,616 + AO353_22435 0.66 +1.6
4,917,616 + AO353_22435 0.66 -0.8
4,917,616 + AO353_22435 0.66 +1.1
4,917,616 + AO353_22435 0.66 +1.4
4,917,616 + AO353_22435 0.66 +0.1
4,917,616 + AO353_22435 0.66 +2.1
4,917,616 + AO353_22435 0.66 -0.4
4,917,616 + AO353_22435 0.66 -0.4
4,917,616 + AO353_22435 0.66 +1.6
4,917,617 - AO353_22435 0.67 +1.1
4,917,617 - AO353_22435 0.67 -1.0
4,917,617 - AO353_22435 0.67 +0.0
4,917,617 - AO353_22435 0.67 +0.4
4,917,617 - AO353_22435 0.67 +0.2
4,917,617 - AO353_22435 0.67 +0.6
4,917,617 - AO353_22435 0.67 +0.5
4,917,617 - AO353_22435 0.67 +1.2
4,917,617 - AO353_22435 0.67 -0.4
4,917,617 - AO353_22435 0.67 +0.4
4,917,617 - AO353_22435 0.67 +0.3
4,917,617 - AO353_22435 0.67 -0.4
4,917,617 - AO353_22435 0.67 -0.8
4,917,617 - AO353_22435 0.67 +1.0
4,917,617 - AO353_22435 0.67 -0.0
4,917,617 - AO353_22435 0.67 -0.0
4,917,617 - AO353_22435 0.67 -0.6
4,917,617 - AO353_22435 0.67 +0.2
4,917,649 + AO353_22435 0.69 +0.6
4,917,650 - AO353_22435 0.69 +0.7
4,917,763 + AO353_22435 0.77 +0.0
4,917,845 + AO353_22435 0.83 -1.0
4,917,863 - AO353_22435 0.85 +1.7
4,917,863 - AO353_22435 0.85 -0.6
4,917,887 + AO353_22435 0.87 -0.7
4,917,888 - AO353_22435 0.87 -0.1
4,917,888 - AO353_22435 0.87 -0.7
4,917,900 - AO353_22435 0.87 +1.0
4,917,900 - AO353_22435 0.87 -0.8
4,917,944 - -0.6
4,917,944 - +3.1
4,918,018 - -0.6
4,918,162 + -0.8
4,918,162 + -0.9
4,918,162 + -1.0
4,918,163 - -0.1
4,918,163 - -0.3
4,918,201 - +0.2
4,918,319 + +2.6
4,918,319 + -0.2
4,918,411 + -0.3
4,918,411 + +1.2
4,918,411 + +0.7
4,918,411 + -1.8
4,918,412 - +1.1
4,918,412 - +0.9
4,918,412 - -0.6
4,918,413 + -1.4
4,918,413 + +0.5
4,918,413 + +1.0
4,918,413 + +0.6
4,918,413 + +0.8
4,918,414 - +0.3
4,918,414 - +0.1
4,918,414 - +0.7
4,918,426 + -1.5
4,918,427 - -0.0
4,918,427 - -1.4
4,918,543 + +0.4
4,918,543 + +0.3
4,918,544 - -1.0
4,918,544 - +0.6
4,918,544 - -0.1
4,918,544 - -1.6
4,918,544 - -0.2
4,918,567 + +0.6
4,918,568 - -0.6
4,918,695 + AO353_22440 0.18 -1.1
4,918,695 + AO353_22440 0.18 +0.6
4,918,695 + AO353_22440 0.18 -2.0
4,918,695 + AO353_22440 0.18 +3.8
4,918,695 + AO353_22440 0.18 +0.1
4,918,695 + AO353_22440 0.18 -1.0
4,918,695 + AO353_22440 0.18 +0.1
4,918,695 + AO353_22440 0.18 +0.7
4,918,696 - AO353_22440 0.18 +0.3
4,918,696 - AO353_22440 0.18 +0.8
4,918,696 - AO353_22440 0.18 +0.4
4,918,696 - AO353_22440 0.18 +0.1
4,918,696 - AO353_22440 0.18 -0.9
4,918,696 - AO353_22440 0.18 +0.3
4,918,697 + AO353_22440 0.18 -0.4
4,918,698 - AO353_22440 0.18 +0.4
4,918,839 + AO353_22440 0.38 +0.2
4,918,839 + AO353_22440 0.38 -0.6
4,918,840 - AO353_22440 0.38 -1.0
4,918,840 - AO353_22440 0.38 -0.1
4,918,840 - AO353_22440 0.38 +0.1
4,918,840 - AO353_22440 0.38 +1.1
4,918,941 + AO353_22440 0.52 +0.6
4,918,941 + AO353_22440 0.52 +0.6
4,918,941 + AO353_22440 0.52 +1.4
4,918,941 + AO353_22440 0.52 +0.9
4,918,942 - AO353_22440 0.52 +0.6
4,919,007 + AO353_22440 0.61 +0.9
4,919,007 + AO353_22440 0.61 -0.3
4,919,007 + AO353_22440 0.61 -0.5
4,919,007 + AO353_22440 0.61 -0.4
4,919,007 + AO353_22440 0.61 -0.8
4,919,007 + AO353_22440 0.61 +0.4
4,919,007 + AO353_22440 0.61 -1.0
4,919,007 + AO353_22440 0.61 -0.2
4,919,008 - AO353_22440 0.61 -0.6
4,919,008 - AO353_22440 0.61 -1.8
4,919,008 - AO353_22440 0.61 +1.6
4,919,024 + AO353_22440 0.63 +0.6
4,919,024 + AO353_22440 0.63 -0.4
4,919,024 + AO353_22440 0.63 -0.9
4,919,025 - AO353_22440 0.64 +0.9
4,919,109 + AO353_22440 0.75 -0.7
4,919,109 + AO353_22440 0.75 -0.1
4,919,109 + AO353_22440 0.75 -0.3
4,919,109 + AO353_22440 0.75 -0.7
4,919,110 - AO353_22440 0.75 -0.8
4,919,110 - AO353_22440 0.75 +1.7
4,919,110 - AO353_22440 0.75 +0.0
4,919,110 - AO353_22440 0.75 +2.0
4,919,175 + AO353_22440 0.85 -0.4
4,919,175 + AO353_22440 0.85 +0.3
4,919,175 + AO353_22440 0.85 -3.4
4,919,175 + AO353_22440 0.85 +0.4
4,919,176 - AO353_22440 0.85 +0.3
4,919,217 + +0.2
4,919,217 + -0.4
4,919,217 + -0.0
4,919,217 + +0.2
4,919,217 + -0.2
4,919,264 + +1.2
4,919,264 + -1.4
4,919,265 - +1.0
4,919,331 + +0.7
4,919,331 + +0.2
4,919,332 - -0.6
4,919,332 - -0.0
4,919,332 - +1.1
4,919,332 - -0.0
4,919,364 + +0.7
4,919,365 - +0.6
4,919,398 + +1.7
4,919,398 + -0.3
4,919,398 + +0.6
4,919,398 + -1.6
4,919,399 - -1.1
4,919,399 - +0.6
4,919,461 - -0.2
4,919,461 - -0.4
4,919,461 - -1.0
4,919,599 + -0.9
4,919,599 + -0.2
4,919,600 - +0.7
4,919,600 - +2.1
4,919,600 - -0.6
4,919,669 - +0.4
4,919,669 - +1.1
4,919,720 + +1.0
4,919,720 + -0.1
4,919,720 + -0.6
4,919,968 + AO353_22445 0.14 -0.3
4,919,971 + AO353_22445 0.14 -0.0
4,919,971 + AO353_22445 0.14 -0.6
4,919,971 + AO353_22445 0.14 +1.1
4,919,971 + AO353_22445 0.14 -0.1
4,919,971 + AO353_22445 0.14 +0.7
4,919,972 - AO353_22445 0.14 +0.8
4,919,972 - AO353_22445 0.14 -1.3
4,919,972 - AO353_22445 0.14 +0.4
4,919,980 + AO353_22445 0.14 -0.3
4,919,981 - AO353_22445 0.14 +0.4
4,919,983 + AO353_22445 0.14 +1.1
4,919,983 + AO353_22445 0.14 -0.9
4,919,983 + AO353_22445 0.14 -0.8
4,919,983 + AO353_22445 0.14 -0.7
4,919,983 + AO353_22445 0.14 +0.2
4,919,984 - AO353_22445 0.14 +0.2
4,919,984 - AO353_22445 0.14 +0.6
4,919,984 - AO353_22445 0.14 +1.1
4,919,984 - AO353_22445 0.14 -0.4
4,919,984 - AO353_22445 0.14 -0.3
4,919,984 - AO353_22445 0.14 -0.8
4,920,030 - AO353_22445 0.15 -1.4
4,920,149 + +0.6
4,920,150 - AO353_22445 0.18 +0.8
4,920,150 - AO353_22445 0.18 -0.8
4,920,150 - AO353_22445 0.18 +0.0
4,920,178 + AO353_22445 0.19 -0.0
4,920,178 + AO353_22445 0.19 +0.2
4,920,178 + AO353_22445 0.19 -0.1
4,920,178 + AO353_22445 0.19 -0.4
4,920,178 + AO353_22445 0.19 +0.2
4,920,179 - AO353_22445 0.19 -0.7
4,920,179 - AO353_22445 0.19 +0.2
4,920,201 + AO353_22445 0.19 -0.6
4,920,201 + AO353_22445 0.19 -0.0
4,920,201 + AO353_22445 0.19 +0.6

Or see this region's nucleotide sequence