Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19795

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19790 and AO353_19795 are separated by 153 nucleotidesAO353_19795 and AO353_19800 are separated by 110 nucleotides AO353_19790: AO353_19790 - sodium:proton antiporter, at 4,351,130 to 4,352,449 _19790 AO353_19795: AO353_19795 - chemotaxis protein, at 4,352,603 to 4,354,285 _19795 AO353_19800: AO353_19800 - protease, at 4,354,396 to 4,355,721 _19800 Position (kb) 4352 4353 4354 4355Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.604 kb on + strand, within AO353_19790at 4351.605 kb on - strand, within AO353_19790at 4351.605 kb on - strand, within AO353_19790at 4351.605 kb on - strand, within AO353_19790at 4351.605 kb on - strand, within AO353_19790at 4351.669 kb on + strand, within AO353_19790at 4351.669 kb on + strand, within AO353_19790at 4351.670 kb on - strand, within AO353_19790at 4351.670 kb on - strand, within AO353_19790at 4351.670 kb on - strand, within AO353_19790at 4351.771 kb on + strand, within AO353_19790at 4351.771 kb on + strand, within AO353_19790at 4351.771 kb on + strand, within AO353_19790at 4351.772 kb on - strand, within AO353_19790at 4351.784 kb on + strand, within AO353_19790at 4351.784 kb on + strand, within AO353_19790at 4351.784 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.829 kb on + strand, within AO353_19790at 4351.830 kb on - strand, within AO353_19790at 4351.957 kb on - strand, within AO353_19790at 4351.957 kb on - strand, within AO353_19790at 4352.133 kb on + strand, within AO353_19790at 4352.134 kb on - strand, within AO353_19790at 4352.134 kb on - strandat 4352.134 kb on - strand, within AO353_19790at 4352.134 kb on - strand, within AO353_19790at 4352.134 kb on - strand, within AO353_19790at 4352.344 kb on + strandat 4352.365 kb on + strandat 4352.365 kb on + strandat 4352.365 kb on + strandat 4352.365 kb on + strandat 4352.365 kb on + strandat 4352.365 kb on + strandat 4352.366 kb on - strandat 4352.366 kb on - strandat 4352.366 kb on - strandat 4352.366 kb on - strandat 4352.366 kb on - strandat 4352.399 kb on + strandat 4352.399 kb on + strandat 4352.399 kb on + strandat 4352.399 kb on + strandat 4352.399 kb on + strandat 4352.399 kb on + strandat 4352.400 kb on - strandat 4352.475 kb on + strandat 4352.475 kb on + strandat 4352.475 kb on + strandat 4352.475 kb on + strandat 4352.475 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.483 kb on + strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.484 kb on - strandat 4352.537 kb on + strandat 4352.569 kb on + strandat 4352.581 kb on + strandat 4352.581 kb on + strandat 4352.581 kb on + strandat 4352.581 kb on + strandat 4352.584 kb on + strandat 4352.774 kb on + strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.775 kb on - strand, within AO353_19795at 4352.810 kb on + strand, within AO353_19795at 4352.810 kb on + strand, within AO353_19795at 4352.810 kb on + strand, within AO353_19795at 4352.811 kb on - strand, within AO353_19795at 4352.811 kb on - strand, within AO353_19795at 4352.879 kb on + strand, within AO353_19795at 4352.880 kb on - strand, within AO353_19795at 4352.894 kb on + strand, within AO353_19795at 4352.895 kb on - strand, within AO353_19795at 4352.895 kb on - strand, within AO353_19795at 4352.917 kb on + strand, within AO353_19795at 4352.917 kb on + strand, within AO353_19795at 4352.918 kb on - strand, within AO353_19795at 4352.996 kb on + strand, within AO353_19795at 4352.996 kb on + strand, within AO353_19795at 4352.996 kb on + strandat 4352.996 kb on + strand, within AO353_19795at 4352.996 kb on + strand, within AO353_19795at 4352.996 kb on + strand, within AO353_19795at 4352.997 kb on - strand, within AO353_19795at 4353.041 kb on + strand, within AO353_19795at 4353.041 kb on + strand, within AO353_19795at 4353.041 kb on + strand, within AO353_19795at 4353.042 kb on - strand, within AO353_19795at 4353.050 kb on + strand, within AO353_19795at 4353.050 kb on + strand, within AO353_19795at 4353.050 kb on + strand, within AO353_19795at 4353.051 kb on - strand, within AO353_19795at 4353.051 kb on - strand, within AO353_19795at 4353.051 kb on - strand, within AO353_19795at 4353.051 kb on - strand, within AO353_19795at 4353.051 kb on - strand, within AO353_19795at 4353.081 kb on + strand, within AO353_19795at 4353.082 kb on - strand, within AO353_19795at 4353.082 kb on - strand, within AO353_19795at 4353.082 kb on - strand, within AO353_19795at 4353.082 kb on - strand, within AO353_19795at 4353.102 kb on - strand, within AO353_19795at 4353.110 kb on + strand, within AO353_19795at 4353.110 kb on + strand, within AO353_19795at 4353.110 kb on + strand, within AO353_19795at 4353.111 kb on - strand, within AO353_19795at 4353.139 kb on + strand, within AO353_19795at 4353.139 kb on + strand, within AO353_19795at 4353.139 kb on + strand, within AO353_19795at 4353.140 kb on - strand, within AO353_19795at 4353.140 kb on - strand, within AO353_19795at 4353.289 kb on + strand, within AO353_19795at 4353.290 kb on - strand, within AO353_19795at 4353.376 kb on + strand, within AO353_19795at 4353.376 kb on + strand, within AO353_19795at 4353.377 kb on - strand, within AO353_19795at 4353.377 kb on - strand, within AO353_19795at 4353.688 kb on + strand, within AO353_19795at 4353.688 kb on + strand, within AO353_19795at 4353.718 kb on + strand, within AO353_19795at 4353.719 kb on - strand, within AO353_19795at 4353.719 kb on - strand, within AO353_19795at 4354.258 kb on + strandat 4354.283 kb on + strandat 4354.283 kb on + strandat 4354.283 kb on + strandat 4354.284 kb on - strandat 4354.284 kb on - strandat 4354.284 kb on - strandat 4354.284 kb on - strandat 4354.324 kb on + strandat 4354.324 kb on + strandat 4354.325 kb on - strandat 4354.325 kb on - strandat 4354.325 kb on - strandat 4354.325 kb on - strandat 4354.397 kb on + strandat 4354.398 kb on - strandat 4354.463 kb on + strandat 4354.463 kb on + strandat 4354.463 kb on + strandat 4354.463 kb on + strandat 4354.463 kb on + strandat 4354.463 kb on + strandat 4354.464 kb on - strandat 4354.464 kb on - strandat 4354.464 kb on - strandat 4354.685 kb on + strand, within AO353_19800at 4354.686 kb on - strand, within AO353_19800at 4354.686 kb on - strand, within AO353_19800at 4354.694 kb on + strand, within AO353_19800at 4354.820 kb on + strand, within AO353_19800at 4354.844 kb on + strand, within AO353_19800at 4354.844 kb on + strand, within AO353_19800at 4354.845 kb on - strand, within AO353_19800at 4354.845 kb on - strand, within AO353_19800at 4354.845 kb on - strand, within AO353_19800at 4354.845 kb on - strand, within AO353_19800at 4354.949 kb on + strand, within AO353_19800at 4354.949 kb on + strand, within AO353_19800at 4354.949 kb on + strand, within AO353_19800at 4354.949 kb on + strand, within AO353_19800at 4354.949 kb on + strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4354.950 kb on - strand, within AO353_19800at 4355.029 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.115 kb on - strand, within AO353_19800at 4355.171 kb on + strand, within AO353_19800at 4355.171 kb on + strand, within AO353_19800at 4355.172 kb on - strand, within AO353_19800at 4355.172 kb on - strand, within AO353_19800at 4355.172 kb on - strand, within AO353_19800at 4355.172 kb on - strand, within AO353_19800at 4355.172 kb on - strand, within AO353_19800at 4355.199 kb on - strand, within AO353_19800

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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4,351,604 + AO353_19790 0.36 +0.2
4,351,604 + AO353_19790 0.36 -1.2
4,351,604 + AO353_19790 0.36 -0.8
4,351,604 + AO353_19790 0.36 +0.5
4,351,604 + AO353_19790 0.36 -1.5
4,351,604 + AO353_19790 0.36 +1.1
4,351,604 + AO353_19790 0.36 -1.4
4,351,604 + AO353_19790 0.36 -1.4
4,351,604 + AO353_19790 0.36 +1.2
4,351,605 - AO353_19790 0.36 -0.2
4,351,605 - AO353_19790 0.36 -0.5
4,351,605 - AO353_19790 0.36 +0.7
4,351,605 - AO353_19790 0.36 -1.0
4,351,669 + AO353_19790 0.41 -0.0
4,351,669 + AO353_19790 0.41 +0.1
4,351,670 - AO353_19790 0.41 -0.1
4,351,670 - AO353_19790 0.41 -1.9
4,351,670 - AO353_19790 0.41 -1.5
4,351,771 + AO353_19790 0.49 +1.0
4,351,771 + AO353_19790 0.49 -0.3
4,351,771 + AO353_19790 0.49 +0.5
4,351,772 - AO353_19790 0.49 +0.8
4,351,784 + AO353_19790 0.50 -0.9
4,351,784 + AO353_19790 0.50 +0.9
4,351,784 + AO353_19790 0.50 -0.4
4,351,829 + AO353_19790 0.53 -0.1
4,351,829 + AO353_19790 0.53 +0.2
4,351,829 + AO353_19790 0.53 +0.8
4,351,829 + AO353_19790 0.53 +0.8
4,351,829 + AO353_19790 0.53 -1.2
4,351,829 + AO353_19790 0.53 -0.2
4,351,830 - AO353_19790 0.53 +0.5
4,351,957 - AO353_19790 0.63 +0.0
4,351,957 - AO353_19790 0.63 +0.9
4,352,133 + AO353_19790 0.76 -0.2
4,352,134 - AO353_19790 0.76 +1.0
4,352,134 - -1.2
4,352,134 - AO353_19790 0.76 -0.8
4,352,134 - AO353_19790 0.76 -1.4
4,352,134 - AO353_19790 0.76 -1.2
4,352,344 + -0.4
4,352,365 + -0.0
4,352,365 + +0.6
4,352,365 + -1.4
4,352,365 + -0.7
4,352,365 + -0.4
4,352,365 + -1.8
4,352,366 - +0.8
4,352,366 - -0.3
4,352,366 - -0.8
4,352,366 - -0.2
4,352,366 - +1.1
4,352,399 + -1.0
4,352,399 + +0.0
4,352,399 + +1.2
4,352,399 + -0.2
4,352,399 + +1.1
4,352,399 + +0.2
4,352,400 - -0.2
4,352,475 + +0.4
4,352,475 + -0.3
4,352,475 + +1.9
4,352,475 + -1.0
4,352,475 + -2.0
4,352,483 + -0.7
4,352,483 + +0.8
4,352,483 + -0.0
4,352,483 + +0.8
4,352,483 + -0.2
4,352,483 + -1.0
4,352,483 + -1.4
4,352,483 + +1.5
4,352,484 - -2.7
4,352,484 - +0.4
4,352,484 - -1.9
4,352,484 - -0.2
4,352,484 - +0.3
4,352,484 - -0.7
4,352,484 - +1.0
4,352,484 - -0.4
4,352,484 - +0.4
4,352,484 - -0.1
4,352,484 - -0.8
4,352,537 + -1.7
4,352,569 + -0.4
4,352,581 + +0.2
4,352,581 + -2.8
4,352,581 + -0.0
4,352,581 + -0.5
4,352,584 + -0.9
4,352,774 + AO353_19795 0.10 -0.7
4,352,775 - AO353_19795 0.10 -1.2
4,352,775 - AO353_19795 0.10 -0.4
4,352,775 - AO353_19795 0.10 +1.2
4,352,775 - AO353_19795 0.10 +2.0
4,352,775 - AO353_19795 0.10 +0.0
4,352,775 - AO353_19795 0.10 +0.5
4,352,775 - AO353_19795 0.10 -2.0
4,352,810 + AO353_19795 0.12 -0.9
4,352,810 + AO353_19795 0.12 -0.2
4,352,810 + AO353_19795 0.12 +0.1
4,352,811 - AO353_19795 0.12 +0.8
4,352,811 - AO353_19795 0.12 +0.5
4,352,879 + AO353_19795 0.16 +0.4
4,352,880 - AO353_19795 0.16 +1.8
4,352,894 + AO353_19795 0.17 +0.5
4,352,895 - AO353_19795 0.17 -0.8
4,352,895 - AO353_19795 0.17 -0.0
4,352,917 + AO353_19795 0.19 -0.3
4,352,917 + AO353_19795 0.19 +0.2
4,352,918 - AO353_19795 0.19 -0.6
4,352,996 + AO353_19795 0.23 +0.4
4,352,996 + AO353_19795 0.23 +0.4
4,352,996 + +1.8
4,352,996 + AO353_19795 0.23 -1.2
4,352,996 + AO353_19795 0.23 -1.9
4,352,996 + AO353_19795 0.23 -0.4
4,352,997 - AO353_19795 0.23 +0.8
4,353,041 + AO353_19795 0.26 +0.5
4,353,041 + AO353_19795 0.26 -0.9
4,353,041 + AO353_19795 0.26 +0.2
4,353,042 - AO353_19795 0.26 -2.0
4,353,050 + AO353_19795 0.27 +0.0
4,353,050 + AO353_19795 0.27 +1.0
4,353,050 + AO353_19795 0.27 -0.3
4,353,051 - AO353_19795 0.27 -0.8
4,353,051 - AO353_19795 0.27 -1.8
4,353,051 - AO353_19795 0.27 -2.0
4,353,051 - AO353_19795 0.27 +0.3
4,353,051 - AO353_19795 0.27 +0.4
4,353,081 + AO353_19795 0.28 +0.9
4,353,082 - AO353_19795 0.28 +0.9
4,353,082 - AO353_19795 0.28 -0.1
4,353,082 - AO353_19795 0.28 +1.5
4,353,082 - AO353_19795 0.28 +0.2
4,353,102 - AO353_19795 0.30 +1.9
4,353,110 + AO353_19795 0.30 -0.7
4,353,110 + AO353_19795 0.30 -0.3
4,353,110 + AO353_19795 0.30 -0.0
4,353,111 - AO353_19795 0.30 -2.3
4,353,139 + AO353_19795 0.32 -0.1
4,353,139 + AO353_19795 0.32 +1.1
4,353,139 + AO353_19795 0.32 -2.0
4,353,140 - AO353_19795 0.32 -0.8
4,353,140 - AO353_19795 0.32 +0.5
4,353,289 + AO353_19795 0.41 +0.3
4,353,290 - AO353_19795 0.41 -0.3
4,353,376 + AO353_19795 0.46 -0.8
4,353,376 + AO353_19795 0.46 -0.5
4,353,377 - AO353_19795 0.46 +0.0
4,353,377 - AO353_19795 0.46 -1.4
4,353,688 + AO353_19795 0.64 -1.5
4,353,688 + AO353_19795 0.64 -2.1
4,353,718 + AO353_19795 0.66 -0.8
4,353,719 - AO353_19795 0.66 -1.4
4,353,719 - AO353_19795 0.66 -1.9
4,354,258 + +0.1
4,354,283 + +0.6
4,354,283 + +1.0
4,354,283 + -0.8
4,354,284 - +1.3
4,354,284 - -0.2
4,354,284 - -0.8
4,354,284 - -0.2
4,354,324 + -0.0
4,354,324 + -1.7
4,354,325 - +0.4
4,354,325 - -0.6
4,354,325 - +0.8
4,354,325 - +0.5
4,354,397 + +0.1
4,354,398 - +0.7
4,354,463 + -1.3
4,354,463 + -0.6
4,354,463 + +0.1
4,354,463 + +0.1
4,354,463 + +0.1
4,354,463 + -0.6
4,354,464 - +0.1
4,354,464 - -0.1
4,354,464 - +1.0
4,354,685 + AO353_19800 0.22 +0.4
4,354,686 - AO353_19800 0.22 -2.3
4,354,686 - AO353_19800 0.22 +0.3
4,354,694 + AO353_19800 0.22 +0.4
4,354,820 + AO353_19800 0.32 +1.0
4,354,844 + AO353_19800 0.34 +0.9
4,354,844 + AO353_19800 0.34 +0.3
4,354,845 - AO353_19800 0.34 -1.2
4,354,845 - AO353_19800 0.34 -1.4
4,354,845 - AO353_19800 0.34 +0.8
4,354,845 - AO353_19800 0.34 +0.4
4,354,949 + AO353_19800 0.42 +0.6
4,354,949 + AO353_19800 0.42 +1.0
4,354,949 + AO353_19800 0.42 +1.7
4,354,949 + AO353_19800 0.42 -0.7
4,354,949 + AO353_19800 0.42 -2.6
4,354,950 - AO353_19800 0.42 -1.9
4,354,950 - AO353_19800 0.42 -1.4
4,354,950 - AO353_19800 0.42 +0.8
4,354,950 - AO353_19800 0.42 -0.4
4,354,950 - AO353_19800 0.42 -0.6
4,354,950 - AO353_19800 0.42 +1.8
4,355,029 - AO353_19800 0.48 -2.7
4,355,115 - AO353_19800 0.54 +0.6
4,355,115 - AO353_19800 0.54 -2.0
4,355,115 - AO353_19800 0.54 +0.2
4,355,115 - AO353_19800 0.54 -0.2
4,355,115 - AO353_19800 0.54 -1.6
4,355,115 - AO353_19800 0.54 -1.1
4,355,171 + AO353_19800 0.58 -0.4
4,355,171 + AO353_19800 0.58 +0.1
4,355,172 - AO353_19800 0.59 -0.6
4,355,172 - AO353_19800 0.59 +0.6
4,355,172 - AO353_19800 0.59 +0.5
4,355,172 - AO353_19800 0.59 +0.3
4,355,172 - AO353_19800 0.59 -2.1
4,355,199 - AO353_19800 0.61 +0.1

Or see this region's nucleotide sequence