Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07385

Experiment: 4C survival; 360 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07380 and AO353_07385 are separated by 67 nucleotidesAO353_07385 and AO353_07390 are separated by 123 nucleotides AO353_07380: AO353_07380 - DNA primase, at 1,620,460 to 1,622,421 _07380 AO353_07385: AO353_07385 - RNA polymerase subunit sigma-70, at 1,622,489 to 1,624,336 _07385 AO353_07390: AO353_07390 - diguanylate cyclase, at 1,624,460 to 1,628,203 _07390 Position (kb) 1622 1623 1624 1625Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1622.375 kb on + strandat 1622.375 kb on + strandat 1622.375 kb on + strandat 1622.427 kb on + strandat 1622.431 kb on + strandat 1624.376 kb on + strandat 1624.376 kb on + strandat 1624.376 kb on + strandat 1624.377 kb on - strandat 1624.381 kb on + strandat 1624.381 kb on + strandat 1624.382 kb on - strandat 1624.382 kb on - strandat 1624.382 kb on - strandat 1624.382 kb on - strandat 1624.419 kb on + strandat 1624.419 kb on + strandat 1624.419 kb on + strandat 1624.488 kb on + strandat 1624.488 kb on + strandat 1624.488 kb on + strandat 1624.489 kb on - strandat 1624.489 kb on - strandat 1624.489 kb on - strandat 1624.489 kb on - strandat 1624.632 kb on - strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.652 kb on + strandat 1624.653 kb on - strandat 1624.653 kb on - strandat 1624.653 kb on - strandat 1624.653 kb on - strandat 1624.653 kb on - strandat 1624.707 kb on + strandat 1624.707 kb on + strandat 1624.707 kb on + strandat 1624.707 kb on + strandat 1624.707 kb on + strandat 1624.708 kb on - strandat 1624.708 kb on - strandat 1624.708 kb on - strandat 1624.708 kb on - strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.793 kb on + strandat 1624.794 kb on - strandat 1624.794 kb on - strandat 1624.794 kb on - strandat 1624.814 kb on + strandat 1624.815 kb on - strandat 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.913 kb on + strand, within AO353_07390at 1624.914 kb on - strand, within AO353_07390at 1625.081 kb on + strand, within AO353_07390at 1625.081 kb on + strand, within AO353_07390at 1625.081 kb on + strand, within AO353_07390at 1625.081 kb on + strand, within AO353_07390at 1625.081 kb on + strand, within AO353_07390at 1625.082 kb on - strand, within AO353_07390at 1625.169 kb on + strand, within AO353_07390at 1625.169 kb on + strand, within AO353_07390at 1625.170 kb on - strand, within AO353_07390at 1625.170 kb on - strand, within AO353_07390at 1625.267 kb on + strand, within AO353_07390at 1625.267 kb on + strand, within AO353_07390at 1625.267 kb on + strand, within AO353_07390at 1625.267 kb on + strand, within AO353_07390at 1625.267 kb on + strand, within AO353_07390at 1625.268 kb on - strand, within AO353_07390at 1625.268 kb on - strand, within AO353_07390at 1625.268 kb on - strand, within AO353_07390at 1625.283 kb on + strand, within AO353_07390at 1625.284 kb on - strand, within AO353_07390at 1625.313 kb on + strand, within AO353_07390at 1625.313 kb on + strand, within AO353_07390at 1625.313 kb on + strand, within AO353_07390at 1625.313 kb on + strand, within AO353_07390at 1625.313 kb on + strand, within AO353_07390at 1625.314 kb on - strand, within AO353_07390at 1625.314 kb on - strand, within AO353_07390at 1625.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 360 hrs
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1,622,375 + +0.7
1,622,375 + +0.1
1,622,375 + -0.3
1,622,427 + -0.2
1,622,431 + -0.0
1,624,376 + -0.6
1,624,376 + -1.4
1,624,376 + -1.1
1,624,377 - -0.5
1,624,381 + +4.8
1,624,381 + +1.6
1,624,382 - +0.4
1,624,382 - +0.8
1,624,382 - +0.7
1,624,382 - -1.4
1,624,419 + -0.4
1,624,419 + -0.8
1,624,419 + -0.0
1,624,488 + -1.3
1,624,488 + -0.7
1,624,488 + +0.7
1,624,489 - -0.7
1,624,489 - -1.8
1,624,489 - -0.3
1,624,489 - -1.6
1,624,632 - +0.1
1,624,652 + +1.3
1,624,652 + +0.2
1,624,652 + +1.0
1,624,652 + +0.5
1,624,652 + -0.2
1,624,652 + +0.9
1,624,652 + -0.7
1,624,652 + -1.4
1,624,653 - +0.2
1,624,653 - -1.6
1,624,653 - -0.7
1,624,653 - +0.4
1,624,653 - +0.8
1,624,707 + -1.7
1,624,707 + +0.6
1,624,707 + +0.2
1,624,707 + +0.3
1,624,707 + -0.8
1,624,708 - +0.1
1,624,708 - -0.7
1,624,708 - -1.9
1,624,708 - -1.5
1,624,793 + +0.1
1,624,793 + -0.9
1,624,793 + -0.8
1,624,793 + +1.0
1,624,793 + +0.1
1,624,793 + -1.8
1,624,793 + +0.7
1,624,793 + +0.9
1,624,794 - -0.5
1,624,794 - -0.5
1,624,794 - +0.2
1,624,814 + -0.6
1,624,815 - +0.4
1,624,913 + AO353_07390 0.12 +0.9
1,624,913 + AO353_07390 0.12 +0.1
1,624,913 + AO353_07390 0.12 -0.2
1,624,913 + AO353_07390 0.12 +0.5
1,624,913 + AO353_07390 0.12 +0.8
1,624,913 + AO353_07390 0.12 +0.6
1,624,913 + AO353_07390 0.12 -0.2
1,624,914 - AO353_07390 0.12 -1.6
1,625,081 + AO353_07390 0.17 -0.2
1,625,081 + AO353_07390 0.17 +0.3
1,625,081 + AO353_07390 0.17 +2.3
1,625,081 + AO353_07390 0.17 +1.0
1,625,081 + AO353_07390 0.17 +1.9
1,625,082 - AO353_07390 0.17 -0.6
1,625,169 + AO353_07390 0.19 -0.1
1,625,169 + AO353_07390 0.19 +1.8
1,625,170 - AO353_07390 0.19 -0.2
1,625,170 - AO353_07390 0.19 -0.3
1,625,267 + AO353_07390 0.22 -0.2
1,625,267 + AO353_07390 0.22 +1.2
1,625,267 + AO353_07390 0.22 -0.7
1,625,267 + AO353_07390 0.22 +0.7
1,625,267 + AO353_07390 0.22 +1.2
1,625,268 - AO353_07390 0.22 -1.0
1,625,268 - AO353_07390 0.22 -1.3
1,625,268 - AO353_07390 0.22 +0.8
1,625,283 + AO353_07390 0.22 +0.6
1,625,284 - AO353_07390 0.22 -1.3
1,625,313 + AO353_07390 0.23 +0.4
1,625,313 + AO353_07390 0.23 -1.4
1,625,313 + AO353_07390 0.23 +0.1
1,625,313 + AO353_07390 0.23 +1.8
1,625,313 + AO353_07390 0.23 -0.7
1,625,314 - AO353_07390 0.23 -1.6
1,625,314 - AO353_07390 0.23 +2.3
1,625,314 - -0.3

Or see this region's nucleotide sequence