Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07380 and AO353_07385 are separated by 67 nucleotides AO353_07385 and AO353_07390 are separated by 123 nucleotides
AO353_07380: AO353_07380 - DNA primase, at 1,620,460 to 1,622,421
_07380
AO353_07385: AO353_07385 - RNA polymerase subunit sigma-70, at 1,622,489 to 1,624,336
_07385
AO353_07390: AO353_07390 - diguanylate cyclase, at 1,624,460 to 1,628,203
_07390
Position (kb)
1622
1623
1624
1625 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1622.375 kb on + strand at 1622.375 kb on + strand at 1622.375 kb on + strand at 1622.427 kb on + strand at 1622.431 kb on + strand at 1624.376 kb on + strand at 1624.376 kb on + strand at 1624.376 kb on + strand at 1624.377 kb on - strand at 1624.381 kb on + strand at 1624.381 kb on + strand at 1624.382 kb on - strand at 1624.382 kb on - strand at 1624.382 kb on - strand at 1624.382 kb on - strand at 1624.419 kb on + strand at 1624.419 kb on + strand at 1624.419 kb on + strand at 1624.488 kb on + strand at 1624.488 kb on + strand at 1624.488 kb on + strand at 1624.489 kb on - strand at 1624.489 kb on - strand at 1624.489 kb on - strand at 1624.489 kb on - strand at 1624.632 kb on - strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.652 kb on + strand at 1624.653 kb on - strand at 1624.653 kb on - strand at 1624.653 kb on - strand at 1624.653 kb on - strand at 1624.653 kb on - strand at 1624.707 kb on + strand at 1624.707 kb on + strand at 1624.707 kb on + strand at 1624.707 kb on + strand at 1624.707 kb on + strand at 1624.708 kb on - strand at 1624.708 kb on - strand at 1624.708 kb on - strand at 1624.708 kb on - strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.793 kb on + strand at 1624.794 kb on - strand at 1624.794 kb on - strand at 1624.794 kb on - strand at 1624.814 kb on + strand at 1624.815 kb on - strand at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.913 kb on + strand, within AO353_07390 at 1624.914 kb on - strand, within AO353_07390 at 1625.081 kb on + strand, within AO353_07390 at 1625.081 kb on + strand, within AO353_07390 at 1625.081 kb on + strand, within AO353_07390 at 1625.081 kb on + strand, within AO353_07390 at 1625.081 kb on + strand, within AO353_07390 at 1625.082 kb on - strand, within AO353_07390 at 1625.169 kb on + strand, within AO353_07390 at 1625.169 kb on + strand, within AO353_07390 at 1625.170 kb on - strand, within AO353_07390 at 1625.170 kb on - strand, within AO353_07390 at 1625.267 kb on + strand, within AO353_07390 at 1625.267 kb on + strand, within AO353_07390 at 1625.267 kb on + strand, within AO353_07390 at 1625.267 kb on + strand, within AO353_07390 at 1625.267 kb on + strand, within AO353_07390 at 1625.268 kb on - strand, within AO353_07390 at 1625.268 kb on - strand, within AO353_07390 at 1625.268 kb on - strand, within AO353_07390 at 1625.283 kb on + strand, within AO353_07390 at 1625.284 kb on - strand, within AO353_07390 at 1625.313 kb on + strand, within AO353_07390 at 1625.313 kb on + strand, within AO353_07390 at 1625.313 kb on + strand, within AO353_07390 at 1625.313 kb on + strand, within AO353_07390 at 1625.313 kb on + strand, within AO353_07390 at 1625.314 kb on - strand, within AO353_07390 at 1625.314 kb on - strand, within AO353_07390 at 1625.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 1,622,375 + +0.7 1,622,375 + +0.1 1,622,375 + -0.3 1,622,427 + -0.2 1,622,431 + -0.0 1,624,376 + -0.6 1,624,376 + -1.4 1,624,376 + -1.1 1,624,377 - -0.5 1,624,381 + +4.8 1,624,381 + +1.6 1,624,382 - +0.4 1,624,382 - +0.8 1,624,382 - +0.7 1,624,382 - -1.4 1,624,419 + -0.4 1,624,419 + -0.8 1,624,419 + -0.0 1,624,488 + -1.3 1,624,488 + -0.7 1,624,488 + +0.7 1,624,489 - -0.7 1,624,489 - -1.8 1,624,489 - -0.3 1,624,489 - -1.6 1,624,632 - +0.1 1,624,652 + +1.3 1,624,652 + +0.2 1,624,652 + +1.0 1,624,652 + +0.5 1,624,652 + -0.2 1,624,652 + +0.9 1,624,652 + -0.7 1,624,652 + -1.4 1,624,653 - +0.2 1,624,653 - -1.6 1,624,653 - -0.7 1,624,653 - +0.4 1,624,653 - +0.8 1,624,707 + -1.7 1,624,707 + +0.6 1,624,707 + +0.2 1,624,707 + +0.3 1,624,707 + -0.8 1,624,708 - +0.1 1,624,708 - -0.7 1,624,708 - -1.9 1,624,708 - -1.5 1,624,793 + +0.1 1,624,793 + -0.9 1,624,793 + -0.8 1,624,793 + +1.0 1,624,793 + +0.1 1,624,793 + -1.8 1,624,793 + +0.7 1,624,793 + +0.9 1,624,794 - -0.5 1,624,794 - -0.5 1,624,794 - +0.2 1,624,814 + -0.6 1,624,815 - +0.4 1,624,913 + AO353_07390 0.12 +0.9 1,624,913 + AO353_07390 0.12 +0.1 1,624,913 + AO353_07390 0.12 -0.2 1,624,913 + AO353_07390 0.12 +0.5 1,624,913 + AO353_07390 0.12 +0.8 1,624,913 + AO353_07390 0.12 +0.6 1,624,913 + AO353_07390 0.12 -0.2 1,624,914 - AO353_07390 0.12 -1.6 1,625,081 + AO353_07390 0.17 -0.2 1,625,081 + AO353_07390 0.17 +0.3 1,625,081 + AO353_07390 0.17 +2.3 1,625,081 + AO353_07390 0.17 +1.0 1,625,081 + AO353_07390 0.17 +1.9 1,625,082 - AO353_07390 0.17 -0.6 1,625,169 + AO353_07390 0.19 -0.1 1,625,169 + AO353_07390 0.19 +1.8 1,625,170 - AO353_07390 0.19 -0.2 1,625,170 - AO353_07390 0.19 -0.3 1,625,267 + AO353_07390 0.22 -0.2 1,625,267 + AO353_07390 0.22 +1.2 1,625,267 + AO353_07390 0.22 -0.7 1,625,267 + AO353_07390 0.22 +0.7 1,625,267 + AO353_07390 0.22 +1.2 1,625,268 - AO353_07390 0.22 -1.0 1,625,268 - AO353_07390 0.22 -1.3 1,625,268 - AO353_07390 0.22 +0.8 1,625,283 + AO353_07390 0.22 +0.6 1,625,284 - AO353_07390 0.22 -1.3 1,625,313 + AO353_07390 0.23 +0.4 1,625,313 + AO353_07390 0.23 -1.4 1,625,313 + AO353_07390 0.23 +0.1 1,625,313 + AO353_07390 0.23 +1.8 1,625,313 + AO353_07390 0.23 -0.7 1,625,314 - AO353_07390 0.23 -1.6 1,625,314 - AO353_07390 0.23 +2.3 1,625,314 - -0.3
Or see this region's nucleotide sequence