Experiment: 4C survival; 360 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02205 and AO353_02210 are separated by 241 nucleotides AO353_02210 and AO353_02215 are separated by 97 nucleotides AO353_02215 and AO353_02220 are separated by 404 nucleotides AO353_02220 and AO353_02225 are separated by 67 nucleotides
AO353_02205: AO353_02205 - hypothetical protein, at 473,385 to 473,915
_02205
AO353_02210: AO353_02210 - hypothetical protein, at 474,157 to 474,675
_02210
AO353_02215: AO353_02215 - long-chain acyl-CoA synthetase, at 474,773 to 476,611
_02215
AO353_02220: AO353_02220 - hypothetical protein, at 477,016 to 477,294
_02220
AO353_02225: AO353_02225 - LuxR family transcriptional regulator, at 477,362 to 477,595
_02225
Position (kb) 474
475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 473.773 kb on + strand, within AO353_02205 at 473.773 kb on + strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.819 kb on - strand, within AO353_02205 at 474.057 kb on + strand at 474.076 kb on + strand at 474.076 kb on + strand at 474.076 kb on + strand at 474.077 kb on - strand at 474.083 kb on + strand at 474.083 kb on + strand at 474.083 kb on + strand at 474.083 kb on + strand at 474.083 kb on + strand at 474.084 kb on - strand at 474.084 kb on - strand at 474.084 kb on - strand at 474.278 kb on + strand, within AO353_02210 at 474.279 kb on - strand, within AO353_02210 at 474.710 kb on + strand at 474.710 kb on + strand at 474.710 kb on + strand at 474.809 kb on + strand at 474.809 kb on + strand at 474.810 kb on - strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.831 kb on + strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.832 kb on - strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.858 kb on + strand at 474.859 kb on - strand at 474.859 kb on - strand at 474.859 kb on - strand at 474.859 kb on - strand at 474.922 kb on - strand at 474.981 kb on + strand, within AO353_02215 at 474.981 kb on + strand, within AO353_02215 at 474.982 kb on - strand, within AO353_02215 at 474.982 kb on - strand, within AO353_02215 at 475.104 kb on + strand, within AO353_02215 at 475.104 kb on + strand, within AO353_02215 at 475.188 kb on + strand, within AO353_02215 at 475.189 kb on - strand, within AO353_02215 at 475.192 kb on + strand, within AO353_02215 at 475.193 kb on - strand, within AO353_02215 at 475.193 kb on - strand, within AO353_02215 at 475.193 kb on - strand, within AO353_02215 at 475.255 kb on + strand, within AO353_02215 at 475.256 kb on - strand, within AO353_02215 at 475.264 kb on - strand, within AO353_02215 at 475.443 kb on + strand, within AO353_02215 at 475.444 kb on - strand, within AO353_02215 at 475.517 kb on - strand, within AO353_02215 at 475.669 kb on - strand, within AO353_02215 at 475.690 kb on - strand, within AO353_02215 at 475.711 kb on - strand, within AO353_02215 at 475.821 kb on + strand, within AO353_02215 at 475.821 kb on + strand, within AO353_02215 at 475.821 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.839 kb on + strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.840 kb on - strand, within AO353_02215 at 475.861 kb on + strand, within AO353_02215 at 475.862 kb on - strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.956 kb on + strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.957 kb on - strand, within AO353_02215 at 475.960 kb on + strand, within AO353_02215 at 475.960 kb on + strand, within AO353_02215 at 475.960 kb on + strand, within AO353_02215 at 475.961 kb on - strand, within AO353_02215 at 475.961 kb on - strand, within AO353_02215 at 475.961 kb on - strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.962 kb on + strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.963 kb on - strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.983 kb on + strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.984 kb on - strand, within AO353_02215 at 475.985 kb on + strand, within AO353_02215 at 475.985 kb on + strand, within AO353_02215 at 475.985 kb on + strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 475.986 kb on - strand, within AO353_02215 at 476.236 kb on + strand, within AO353_02215 at 476.236 kb on + strand, within AO353_02215 at 476.236 kb on + strand, within AO353_02215 at 476.236 kb on + strand, within AO353_02215 at 476.237 kb on - strand, within AO353_02215 at 476.359 kb on - strand, within AO353_02215 at 476.359 kb on - strand, within AO353_02215 at 476.397 kb on + strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.443 kb on + strand at 476.563 kb on + strand at 476.563 kb on + strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.652 kb on + strand at 476.680 kb on + strand at 476.681 kb on - strand at 476.681 kb on - strand at 476.719 kb on - strand at 476.735 kb on + strand at 476.736 kb on - strand at 476.736 kb on - strand at 476.773 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.971 kb on + strand at 477.112 kb on - strand, within AO353_02220 at 477.148 kb on + strand, within AO353_02220 at 477.280 kb on + strand at 477.280 kb on + strand at 477.280 kb on + strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.292 kb on + strand at 477.292 kb on + strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.522 kb on + strand, within AO353_02225 at 477.523 kb on - strand, within AO353_02225 at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 360 hrs remove 473,773 + AO353_02205 0.73 -1.5 473,773 + AO353_02205 0.73 -1.1 473,774 - AO353_02205 0.73 +1.3 473,774 - AO353_02205 0.73 +0.7 473,818 + AO353_02205 0.82 +0.1 473,818 + AO353_02205 0.82 +1.7 473,818 + AO353_02205 0.82 +1.6 473,819 - AO353_02205 0.82 -0.9 474,057 + +0.7 474,076 + -0.1 474,076 + +0.4 474,076 + -0.5 474,077 - -0.2 474,083 + -0.5 474,083 + +0.8 474,083 + -1.1 474,083 + +1.0 474,083 + -1.8 474,084 - -0.2 474,084 - -0.3 474,084 - +0.5 474,278 + AO353_02210 0.23 +0.9 474,279 - AO353_02210 0.24 -1.5 474,710 + +0.2 474,710 + +0.8 474,710 + -0.6 474,809 + -0.2 474,809 + -0.9 474,810 - -0.2 474,831 + -0.4 474,831 + -0.7 474,831 + +0.2 474,831 + -1.7 474,831 + +0.4 474,831 + +0.1 474,831 + +1.3 474,831 + +0.5 474,831 + -0.3 474,831 + +0.3 474,831 + +1.1 474,831 + -0.1 474,831 + +1.9 474,831 + -0.5 474,831 + +1.1 474,831 + -0.2 474,832 - -1.9 474,832 - +0.8 474,832 - -1.7 474,832 - +0.1 474,832 - -1.1 474,832 - -0.5 474,832 - -2.2 474,832 - +1.1 474,832 - -0.4 474,832 - +0.6 474,832 - +0.0 474,832 - -1.2 474,832 - +0.4 474,832 - +1.2 474,832 - +0.3 474,832 - +0.2 474,832 - -0.7 474,832 - -0.2 474,832 - -1.1 474,832 - -0.3 474,832 - +1.1 474,832 - -0.6 474,832 - +1.9 474,858 + -2.7 474,858 + -1.2 474,858 + -0.1 474,858 + +0.0 474,858 + +0.0 474,858 + +0.3 474,858 + -0.5 474,858 + -1.0 474,859 - +0.8 474,859 - -1.8 474,859 - -0.7 474,859 - +0.2 474,922 - -0.4 474,981 + AO353_02215 0.11 -0.4 474,981 + AO353_02215 0.11 -0.8 474,982 - AO353_02215 0.11 +1.0 474,982 - AO353_02215 0.11 -1.0 475,104 + AO353_02215 0.18 +0.1 475,104 + AO353_02215 0.18 +0.8 475,188 + AO353_02215 0.23 -0.8 475,189 - AO353_02215 0.23 -2.3 475,192 + AO353_02215 0.23 +0.5 475,193 - AO353_02215 0.23 +1.4 475,193 - AO353_02215 0.23 +0.6 475,193 - AO353_02215 0.23 -1.1 475,255 + AO353_02215 0.26 +1.2 475,256 - AO353_02215 0.26 +0.6 475,264 - AO353_02215 0.27 +0.3 475,443 + AO353_02215 0.36 +0.5 475,444 - AO353_02215 0.36 +0.2 475,517 - AO353_02215 0.40 -0.9 475,669 - AO353_02215 0.49 -1.1 475,690 - AO353_02215 0.50 -0.4 475,711 - AO353_02215 0.51 +0.1 475,821 + AO353_02215 0.57 +0.8 475,821 + AO353_02215 0.57 +0.2 475,821 + AO353_02215 0.57 +0.3 475,839 + AO353_02215 0.58 -1.6 475,839 + AO353_02215 0.58 -1.5 475,839 + AO353_02215 0.58 -0.9 475,839 + AO353_02215 0.58 -0.5 475,839 + AO353_02215 0.58 +0.5 475,839 + AO353_02215 0.58 +0.3 475,839 + AO353_02215 0.58 +1.0 475,839 + AO353_02215 0.58 -0.7 475,839 + AO353_02215 0.58 -0.9 475,840 - AO353_02215 0.58 -0.4 475,840 - AO353_02215 0.58 -0.9 475,840 - AO353_02215 0.58 -0.9 475,840 - AO353_02215 0.58 -2.5 475,840 - AO353_02215 0.58 +1.0 475,840 - AO353_02215 0.58 +1.6 475,840 - AO353_02215 0.58 -2.2 475,840 - AO353_02215 0.58 -1.0 475,840 - AO353_02215 0.58 +0.8 475,840 - AO353_02215 0.58 +0.4 475,840 - AO353_02215 0.58 +0.8 475,861 + AO353_02215 0.59 +0.2 475,862 - AO353_02215 0.59 +1.1 475,956 + AO353_02215 0.64 +0.4 475,956 + AO353_02215 0.64 -0.1 475,956 + AO353_02215 0.64 +0.8 475,956 + AO353_02215 0.64 -1.4 475,956 + AO353_02215 0.64 -0.1 475,956 + AO353_02215 0.64 -1.4 475,956 + AO353_02215 0.64 -0.9 475,956 + AO353_02215 0.64 +0.8 475,956 + AO353_02215 0.64 +1.5 475,956 + AO353_02215 0.64 -0.5 475,956 + AO353_02215 0.64 +0.3 475,956 + AO353_02215 0.64 +0.3 475,956 + AO353_02215 0.64 -0.1 475,956 + AO353_02215 0.64 -0.1 475,956 + AO353_02215 0.64 +0.3 475,957 - AO353_02215 0.64 -0.4 475,957 - AO353_02215 0.64 +0.9 475,957 - AO353_02215 0.64 -0.2 475,957 - AO353_02215 0.64 +0.0 475,957 - AO353_02215 0.64 -1.6 475,957 - AO353_02215 0.64 +0.9 475,957 - AO353_02215 0.64 +0.9 475,957 - AO353_02215 0.64 -0.9 475,957 - AO353_02215 0.64 +0.5 475,957 - AO353_02215 0.64 +0.3 475,957 - AO353_02215 0.64 +0.2 475,957 - AO353_02215 0.64 +0.0 475,957 - AO353_02215 0.64 -0.4 475,957 - AO353_02215 0.64 +0.9 475,960 + AO353_02215 0.65 +0.5 475,960 + AO353_02215 0.65 +0.9 475,960 + AO353_02215 0.65 +0.5 475,961 - AO353_02215 0.65 +1.3 475,961 - AO353_02215 0.65 +0.1 475,961 - AO353_02215 0.65 -0.2 475,962 + AO353_02215 0.65 -1.7 475,962 + AO353_02215 0.65 +0.3 475,962 + AO353_02215 0.65 -0.9 475,962 + AO353_02215 0.65 -0.9 475,962 + AO353_02215 0.65 -1.2 475,962 + AO353_02215 0.65 -0.1 475,962 + AO353_02215 0.65 +0.5 475,962 + AO353_02215 0.65 -0.7 475,962 + AO353_02215 0.65 +0.5 475,962 + AO353_02215 0.65 +0.4 475,962 + AO353_02215 0.65 -0.4 475,962 + AO353_02215 0.65 -2.0 475,962 + AO353_02215 0.65 -1.1 475,962 + AO353_02215 0.65 +1.2 475,962 + AO353_02215 0.65 -1.5 475,962 + AO353_02215 0.65 +1.1 475,962 + AO353_02215 0.65 -1.7 475,963 - AO353_02215 0.65 -0.7 475,963 - AO353_02215 0.65 -0.5 475,963 - AO353_02215 0.65 -1.5 475,963 - AO353_02215 0.65 +0.5 475,963 - AO353_02215 0.65 +0.6 475,963 - AO353_02215 0.65 -0.5 475,963 - AO353_02215 0.65 -0.8 475,963 - AO353_02215 0.65 -0.0 475,963 - AO353_02215 0.65 -0.7 475,963 - AO353_02215 0.65 +1.9 475,963 - AO353_02215 0.65 -0.3 475,963 - AO353_02215 0.65 -0.1 475,963 - AO353_02215 0.65 +0.7 475,963 - AO353_02215 0.65 -0.0 475,983 + AO353_02215 0.66 +0.8 475,983 + AO353_02215 0.66 -0.1 475,983 + AO353_02215 0.66 +0.6 475,983 + AO353_02215 0.66 -0.4 475,983 + AO353_02215 0.66 -0.7 475,983 + AO353_02215 0.66 -2.0 475,983 + AO353_02215 0.66 -0.4 475,984 - AO353_02215 0.66 +0.9 475,984 - AO353_02215 0.66 +0.9 475,984 - AO353_02215 0.66 -0.9 475,984 - AO353_02215 0.66 +1.2 475,984 - AO353_02215 0.66 -0.7 475,984 - AO353_02215 0.66 -0.2 475,984 - AO353_02215 0.66 +0.8 475,984 - AO353_02215 0.66 -0.2 475,985 + AO353_02215 0.66 +0.6 475,985 + AO353_02215 0.66 -0.6 475,985 + AO353_02215 0.66 +0.6 475,986 - AO353_02215 0.66 +0.3 475,986 - AO353_02215 0.66 +0.6 475,986 - AO353_02215 0.66 +0.5 475,986 - AO353_02215 0.66 -1.4 475,986 - AO353_02215 0.66 +0.5 475,986 - AO353_02215 0.66 +0.7 476,236 + AO353_02215 0.80 +1.5 476,236 + AO353_02215 0.80 +0.2 476,236 + AO353_02215 0.80 -0.1 476,236 + AO353_02215 0.80 -0.1 476,237 - AO353_02215 0.80 -1.0 476,359 - AO353_02215 0.86 +1.1 476,359 - AO353_02215 0.86 +0.5 476,397 + AO353_02215 0.88 -0.1 476,398 - AO353_02215 0.88 -1.1 476,398 - AO353_02215 0.88 -0.1 476,398 - AO353_02215 0.88 -0.1 476,398 - AO353_02215 0.88 +0.6 476,443 + -1.8 476,563 + +1.3 476,563 + +4.5 476,564 - -2.3 476,564 - -1.2 476,564 - -0.3 476,652 + -0.5 476,680 + +0.9 476,681 - +0.9 476,681 - +1.9 476,719 - -0.7 476,735 + +0.2 476,736 - -0.7 476,736 - +0.1 476,773 + -1.0 476,795 + +0.5 476,795 + +0.6 476,795 + -1.4 476,971 + +0.5 477,112 - AO353_02220 0.34 +1.7 477,148 + AO353_02220 0.47 -0.6 477,280 + -0.9 477,280 + -0.3 477,280 + -0.1 477,281 - +0.3 477,281 - +0.7 477,281 - -1.1 477,292 + -0.9 477,292 + -0.5 477,293 - -1.2 477,293 - +1.5 477,293 - +0.6 477,293 - -0.3 477,293 - -0.7 477,293 - -0.9 477,293 - -1.7 477,293 - -2.0 477,432 + AO353_02225 0.30 -0.8 477,432 + AO353_02225 0.30 +0.9 477,432 + AO353_02225 0.30 +0.8 477,432 + AO353_02225 0.30 -1.2 477,432 + AO353_02225 0.30 -0.5 477,433 - AO353_02225 0.30 -0.2 477,433 - AO353_02225 0.30 -2.6 477,433 - AO353_02225 0.30 +0.8 477,433 - AO353_02225 0.30 +0.4 477,433 - AO353_02225 0.30 -1.7 477,522 + AO353_02225 0.68 +0.8 477,523 - AO353_02225 0.69 -0.3 477,599 + +1.9 477,599 + +0.9 477,599 + -0.4 477,599 + +0.5
Or see this region's nucleotide sequence