Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3679

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3678 and Rru_A3679 are separated by 188 nucleotidesRru_A3679 and Rru_A3680 are separated by 61 nucleotides Rru_A3678: Rru_A3678 - TRAP dicarboxylate transporter- DctP subunit (NCBI), at 4,225,525 to 4,226,520 _A3678 Rru_A3679: Rru_A3679 - Rod shape-determining protein RodA (NCBI), at 4,226,709 to 4,227,839 _A3679 Rru_A3680: Rru_A3680 - Integral membrane protein TerC (NCBI), at 4,227,901 to 4,228,893 _A3680 Position (kb) 4226 4227 4228Strain fitness (log2 ratio) -3 -2 -1 0 1at 4225.873 kb on - strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.874 kb on + strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.875 kb on - strand, within Rru_A3678at 4225.931 kb on + strand, within Rru_A3678at 4226.090 kb on + strand, within Rru_A3678at 4226.192 kb on + strand, within Rru_A3678at 4226.192 kb on + strand, within Rru_A3678at 4226.192 kb on + strand, within Rru_A3678at 4226.193 kb on - strand, within Rru_A3678at 4226.193 kb on - strand, within Rru_A3678at 4226.309 kb on + strand, within Rru_A3678at 4226.310 kb on - strand, within Rru_A3678at 4226.310 kb on - strand, within Rru_A3678at 4226.310 kb on - strand, within Rru_A3678at 4226.310 kb on - strand, within Rru_A3678at 4226.327 kb on + strand, within Rru_A3678at 4226.433 kb on + strandat 4226.434 kb on - strandat 4226.518 kb on + strandat 4226.521 kb on - strandat 4226.521 kb on - strandat 4226.521 kb on - strandat 4226.545 kb on - strandat 4226.635 kb on + strandat 4226.638 kb on - strandat 4226.638 kb on - strandat 4227.903 kb on - strandat 4227.980 kb on - strandat 4228.025 kb on + strand, within Rru_A3680at 4228.026 kb on - strand, within Rru_A3680at 4228.026 kb on - strand, within Rru_A3680at 4228.026 kb on - strand, within Rru_A3680at 4228.071 kb on - strand, within Rru_A3680at 4228.079 kb on + strand, within Rru_A3680at 4228.080 kb on - strand, within Rru_A3680at 4228.080 kb on - strand, within Rru_A3680at 4228.082 kb on - strand, within Rru_A3680at 4228.082 kb on - strand, within Rru_A3680at 4228.082 kb on - strand, within Rru_A3680at 4228.116 kb on - strand, within Rru_A3680at 4228.458 kb on + strand, within Rru_A3680at 4228.460 kb on + strand, within Rru_A3680at 4228.461 kb on - strand, within Rru_A3680at 4228.461 kb on - strand, within Rru_A3680at 4228.540 kb on - strand, within Rru_A3680at 4228.646 kb on + strand, within Rru_A3680at 4228.646 kb on + strand, within Rru_A3680at 4228.646 kb on + strand, within Rru_A3680at 4228.646 kb on + strand, within Rru_A3680at 4228.647 kb on - strand, within Rru_A3680at 4228.659 kb on - strand, within Rru_A3680at 4228.685 kb on + strand, within Rru_A3680at 4228.686 kb on - strand, within Rru_A3680at 4228.726 kb on - strand, within Rru_A3680at 4228.727 kb on + strand, within Rru_A3680at 4228.728 kb on - strand, within Rru_A3680at 4228.728 kb on - strand, within Rru_A3680

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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4,225,873 - Rru_A3678 0.35 -0.4
4,225,874 + Rru_A3678 0.35 +0.1
4,225,874 + Rru_A3678 0.35 -0.9
4,225,874 + Rru_A3678 0.35 -0.9
4,225,874 + Rru_A3678 0.35 -1.4
4,225,874 + Rru_A3678 0.35 -0.9
4,225,874 + Rru_A3678 0.35 +0.1
4,225,874 + Rru_A3678 0.35 -2.0
4,225,874 + Rru_A3678 0.35 -0.5
4,225,875 - Rru_A3678 0.35 -1.5
4,225,875 - Rru_A3678 0.35 -0.6
4,225,875 - Rru_A3678 0.35 -0.0
4,225,875 - Rru_A3678 0.35 -1.2
4,225,875 - Rru_A3678 0.35 +0.1
4,225,875 - Rru_A3678 0.35 +0.1
4,225,875 - Rru_A3678 0.35 -1.4
4,225,875 - Rru_A3678 0.35 -0.6
4,225,875 - Rru_A3678 0.35 -1.3
4,225,875 - Rru_A3678 0.35 -0.4
4,225,875 - Rru_A3678 0.35 -1.3
4,225,875 - Rru_A3678 0.35 -1.5
4,225,875 - Rru_A3678 0.35 +0.1
4,225,931 + Rru_A3678 0.41 +0.1
4,226,090 + Rru_A3678 0.57 -1.6
4,226,192 + Rru_A3678 0.67 +0.1
4,226,192 + Rru_A3678 0.67 +0.1
4,226,192 + Rru_A3678 0.67 -0.6
4,226,193 - Rru_A3678 0.67 -0.2
4,226,193 - Rru_A3678 0.67 +0.8
4,226,309 + Rru_A3678 0.79 +0.1
4,226,310 - Rru_A3678 0.79 -1.1
4,226,310 - Rru_A3678 0.79 -1.4
4,226,310 - Rru_A3678 0.79 +0.4
4,226,310 - Rru_A3678 0.79 +0.2
4,226,327 + Rru_A3678 0.81 +0.1
4,226,433 + +0.1
4,226,434 - -0.9
4,226,518 + -0.6
4,226,521 - -1.5
4,226,521 - -1.3
4,226,521 - -1.8
4,226,545 - +0.1
4,226,635 + +0.1
4,226,638 - -2.3
4,226,638 - +0.1
4,227,903 - +0.1
4,227,980 - -1.3
4,228,025 + Rru_A3680 0.12 +0.1
4,228,026 - Rru_A3680 0.13 -0.6
4,228,026 - Rru_A3680 0.13 +0.1
4,228,026 - Rru_A3680 0.13 -0.9
4,228,071 - Rru_A3680 0.17 -0.9
4,228,079 + Rru_A3680 0.18 +0.1
4,228,080 - Rru_A3680 0.18 -0.8
4,228,080 - Rru_A3680 0.18 -1.4
4,228,082 - Rru_A3680 0.18 -2.9
4,228,082 - Rru_A3680 0.18 -1.9
4,228,082 - Rru_A3680 0.18 -1.5
4,228,116 - Rru_A3680 0.22 +0.1
4,228,458 + Rru_A3680 0.56 +0.1
4,228,460 + Rru_A3680 0.56 +0.1
4,228,461 - Rru_A3680 0.56 -1.7
4,228,461 - Rru_A3680 0.56 +0.1
4,228,540 - Rru_A3680 0.64 -2.8
4,228,646 + Rru_A3680 0.75 -0.9
4,228,646 + Rru_A3680 0.75 +0.1
4,228,646 + Rru_A3680 0.75 +0.3
4,228,646 + Rru_A3680 0.75 -1.6
4,228,647 - Rru_A3680 0.75 -1.3
4,228,659 - Rru_A3680 0.76 +0.1
4,228,685 + Rru_A3680 0.79 +0.1
4,228,686 - Rru_A3680 0.79 +0.1
4,228,726 - Rru_A3680 0.83 -1.9
4,228,727 + Rru_A3680 0.83 -0.7
4,228,728 - Rru_A3680 0.83 -0.9
4,228,728 - Rru_A3680 0.83 -1.1

Or see this region's nucleotide sequence