Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2850

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2849 and Rru_A2850 overlap by 1 nucleotidesRru_A2850 and Rru_A2851 are separated by 3 nucleotidesRru_A2851 and Rru_A2852 are separated by 164 nucleotides Rru_A2849: Rru_A2849 - Flagellar P-ring protein (NCBI), at 3,279,071 to 3,280,222 _A2849 Rru_A2850: Rru_A2850 - hypothetical protein (NCBI), at 3,280,222 to 3,280,551 _A2850 Rru_A2851: Rru_A2851 - hypothetical protein (NCBI), at 3,280,555 to 3,281,361 _A2851 Rru_A2852: Rru_A2852 - hypothetical protein (NCBI), at 3,281,526 to 3,283,709 _A2852 Position (kb) 3280 3281Strain fitness (log2 ratio) -2 -1 0 1at 3279.226 kb on + strand, within Rru_A2849at 3279.226 kb on + strand, within Rru_A2849at 3279.226 kb on + strand, within Rru_A2849at 3279.226 kb on + strand, within Rru_A2849at 3279.226 kb on + strand, within Rru_A2849at 3279.227 kb on - strand, within Rru_A2849at 3279.227 kb on - strand, within Rru_A2849at 3279.521 kb on + strand, within Rru_A2849at 3279.522 kb on - strand, within Rru_A2849at 3279.522 kb on - strand, within Rru_A2849at 3279.522 kb on - strand, within Rru_A2849at 3279.522 kb on - strand, within Rru_A2849at 3279.558 kb on - strand, within Rru_A2849at 3279.653 kb on - strand, within Rru_A2849at 3279.653 kb on - strand, within Rru_A2849at 3279.806 kb on + strand, within Rru_A2849at 3279.806 kb on + strand, within Rru_A2849at 3280.049 kb on - strand, within Rru_A2849at 3280.102 kb on + strand, within Rru_A2849at 3280.314 kb on + strand, within Rru_A2850at 3280.314 kb on + strand, within Rru_A2850at 3280.315 kb on - strand, within Rru_A2850at 3280.315 kb on - strand, within Rru_A2850at 3280.315 kb on - strand, within Rru_A2850at 3280.563 kb on - strandat 3281.065 kb on + strand, within Rru_A2851at 3281.068 kb on + strand, within Rru_A2851at 3281.069 kb on - strand, within Rru_A2851at 3281.069 kb on - strand, within Rru_A2851at 3281.069 kb on - strand, within Rru_A2851at 3281.108 kb on + strand, within Rru_A2851at 3281.141 kb on + strand, within Rru_A2851at 3281.141 kb on + strand, within Rru_A2851at 3281.141 kb on + strand, within Rru_A2851at 3281.142 kb on - strand, within Rru_A2851at 3281.142 kb on - strand, within Rru_A2851at 3281.142 kb on - strand, within Rru_A2851at 3281.142 kb on - strand, within Rru_A2851at 3281.284 kb on + strandat 3281.284 kb on + strandat 3281.285 kb on - strandat 3281.347 kb on - strandat 3281.347 kb on - strandat 3281.360 kb on - strandat 3281.412 kb on - strandat 3281.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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3,279,226 + Rru_A2849 0.13 +0.1
3,279,226 + Rru_A2849 0.13 -1.0
3,279,226 + Rru_A2849 0.13 +0.1
3,279,226 + Rru_A2849 0.13 -0.4
3,279,226 + Rru_A2849 0.13 -1.8
3,279,227 - Rru_A2849 0.14 +0.1
3,279,227 - Rru_A2849 0.14 +0.1
3,279,521 + Rru_A2849 0.39 +0.1
3,279,522 - Rru_A2849 0.39 -0.9
3,279,522 - Rru_A2849 0.39 +0.1
3,279,522 - Rru_A2849 0.39 +0.1
3,279,522 - Rru_A2849 0.39 -1.9
3,279,558 - Rru_A2849 0.42 +0.1
3,279,653 - Rru_A2849 0.51 -1.3
3,279,653 - Rru_A2849 0.51 -2.2
3,279,806 + Rru_A2849 0.64 +0.1
3,279,806 + Rru_A2849 0.64 +0.1
3,280,049 - Rru_A2849 0.85 +0.1
3,280,102 + Rru_A2849 0.89 +0.1
3,280,314 + Rru_A2850 0.28 -0.7
3,280,314 + Rru_A2850 0.28 +0.1
3,280,315 - Rru_A2850 0.28 +0.1
3,280,315 - Rru_A2850 0.28 -0.5
3,280,315 - Rru_A2850 0.28 -0.4
3,280,563 - +0.1
3,281,065 + Rru_A2851 0.63 +0.4
3,281,068 + Rru_A2851 0.64 -1.3
3,281,069 - Rru_A2851 0.64 -1.5
3,281,069 - Rru_A2851 0.64 +0.1
3,281,069 - Rru_A2851 0.64 +0.1
3,281,108 + Rru_A2851 0.69 -1.2
3,281,141 + Rru_A2851 0.73 -1.4
3,281,141 + Rru_A2851 0.73 +0.1
3,281,141 + Rru_A2851 0.73 -1.0
3,281,142 - Rru_A2851 0.73 +0.1
3,281,142 - Rru_A2851 0.73 +0.4
3,281,142 - Rru_A2851 0.73 -0.3
3,281,142 - Rru_A2851 0.73 -1.3
3,281,284 + -1.8
3,281,284 + -1.0
3,281,285 - +0.1
3,281,347 - -1.7
3,281,347 - -1.5
3,281,360 - -0.3
3,281,412 - +0.1
3,281,412 - -1.7

Or see this region's nucleotide sequence