Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2766

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2765 and Rru_A2766 are separated by 44 nucleotidesRru_A2766 and Rru_A2767 are separated by 350 nucleotides Rru_A2765: Rru_A2765 - GCN5-related N-acetyltransferase (NCBI), at 3,199,864 to 3,200,985 _A2765 Rru_A2766: Rru_A2766 - Protein of unknown function DUF329 (NCBI), at 3,201,030 to 3,201,266 _A2766 Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999 _A2767 Position (kb) 3201 3202Strain fitness (log2 ratio) -2 -1 0 1at 3200.173 kb on - strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.282 kb on + strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.283 kb on - strand, within Rru_A2765at 3200.489 kb on + strand, within Rru_A2765at 3200.490 kb on - strand, within Rru_A2765at 3200.570 kb on + strand, within Rru_A2765at 3200.571 kb on - strand, within Rru_A2765at 3200.573 kb on + strand, within Rru_A2765at 3200.573 kb on + strand, within Rru_A2765at 3200.574 kb on - strand, within Rru_A2765at 3200.615 kb on + strand, within Rru_A2765at 3200.615 kb on + strand, within Rru_A2765at 3200.615 kb on + strand, within Rru_A2765at 3200.615 kb on + strand, within Rru_A2765at 3200.616 kb on - strand, within Rru_A2765at 3200.759 kb on + strand, within Rru_A2765at 3200.759 kb on + strand, within Rru_A2765at 3200.760 kb on - strand, within Rru_A2765at 3201.073 kb on + strand, within Rru_A2766at 3201.074 kb on - strand, within Rru_A2766at 3201.074 kb on - strand, within Rru_A2766at 3201.258 kb on + strandat 3201.259 kb on - strandat 3201.266 kb on + strandat 3201.366 kb on + strandat 3201.367 kb on - strandat 3201.394 kb on + strandat 3201.395 kb on - strandat 3201.409 kb on + strandat 3201.409 kb on + strandat 3201.410 kb on - strandat 3201.436 kb on + strandat 3201.436 kb on + strandat 3201.437 kb on - strandat 3201.437 kb on - strandat 3201.478 kb on - strandat 3201.517 kb on + strandat 3201.518 kb on - strandat 3201.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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3,200,173 - Rru_A2765 0.28 -0.7
3,200,282 + Rru_A2765 0.37 -0.6
3,200,282 + Rru_A2765 0.37 -0.5
3,200,282 + Rru_A2765 0.37 -2.0
3,200,282 + Rru_A2765 0.37 +0.1
3,200,282 + Rru_A2765 0.37 -0.1
3,200,282 + Rru_A2765 0.37 +0.1
3,200,282 + Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 -0.9
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,283 - Rru_A2765 0.37 +0.1
3,200,489 + Rru_A2765 0.56 -0.9
3,200,490 - Rru_A2765 0.56 -1.8
3,200,570 + Rru_A2765 0.63 +0.1
3,200,571 - Rru_A2765 0.63 -0.2
3,200,573 + Rru_A2765 0.63 +0.1
3,200,573 + Rru_A2765 0.63 -1.8
3,200,574 - Rru_A2765 0.63 -1.2
3,200,615 + Rru_A2765 0.67 -0.9
3,200,615 + Rru_A2765 0.67 -0.8
3,200,615 + Rru_A2765 0.67 +1.7
3,200,615 + Rru_A2765 0.67 +0.1
3,200,616 - Rru_A2765 0.67 +0.1
3,200,759 + Rru_A2765 0.80 +0.1
3,200,759 + Rru_A2765 0.80 -0.8
3,200,760 - Rru_A2765 0.80 -2.1
3,201,073 + Rru_A2766 0.18 -0.2
3,201,074 - Rru_A2766 0.19 +0.1
3,201,074 - Rru_A2766 0.19 -0.9
3,201,258 + +0.1
3,201,259 - -1.0
3,201,266 + +1.0
3,201,366 + -1.2
3,201,367 - -0.9
3,201,394 + -1.6
3,201,395 - -0.4
3,201,409 + -1.5
3,201,409 + -0.9
3,201,410 - -1.0
3,201,436 + +0.1
3,201,436 + -0.9
3,201,437 - -1.5
3,201,437 - -1.0
3,201,478 - -1.6
3,201,517 + +0.1
3,201,518 - -0.5
3,201,518 - -0.8

Or see this region's nucleotide sequence