Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0941

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0940 and Rru_A0941 are separated by 13 nucleotidesRru_A0941 and Rru_A0942 are separated by 347 nucleotidesRru_A0942 and Rru_A0943 are separated by 107 nucleotides Rru_A0940: Rru_A0940 - DNA repair protein RecN (NCBI), at 1,120,804 to 1,122,537 _A0940 Rru_A0941: Rru_A0941 - competence lipoprotein ComL, putative (NCBI), at 1,122,551 to 1,123,429 _A0941 Rru_A0942: Rru_A0942 - GreA/GreB family elongation factor (NCBI), at 1,123,777 to 1,124,187 _A0942 Rru_A0943: Rru_A0943 - UDP-3-0-acyl N-acetylglucosamine deacetylase (NCBI), at 1,124,295 to 1,125,338 _A0943 Position (kb) 1122 1123 1124Strain fitness (log2 ratio) -1 0 1at 1121.643 kb on + strand, within Rru_A0940at 1121.644 kb on - strand, within Rru_A0940at 1122.216 kb on - strand, within Rru_A0940at 1122.216 kb on - strand, within Rru_A0940at 1122.377 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.733 kb on + strandat 1123.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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1,121,643 + Rru_A0940 0.48 +0.1
1,121,644 - Rru_A0940 0.48 -0.9
1,122,216 - Rru_A0940 0.81 +0.1
1,122,216 - Rru_A0940 0.81 +0.1
1,122,377 - +0.1
1,123,517 - -1.7
1,123,517 - +0.1
1,123,517 - -0.2
1,123,733 + +0.1
1,123,773 - -0.9

Or see this region's nucleotide sequence