Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0723

Experiment: Succinic Acid; Light intensity 150 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0721 and Rru_A0722 overlap by 4 nucleotidesRru_A0722 and Rru_A0723 are separated by 225 nucleotidesRru_A0723 and Rru_A0724 overlap by 4 nucleotidesRru_A0724 and Rru_A0725 are separated by 4 nucleotides Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062 _A0721 Rru_A0722: Rru_A0722 - Sigma-24 (FecI) (NCBI), at 850,059 to 850,679 _A0722 Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290 _A0723 Rru_A0724: Rru_A0724 - Protein of unknown function DUF1365 (NCBI), at 852,287 to 853,108 _A0724 Rru_A0725: Rru_A0725 - Cyclopropane-fatty-acyl-phospholipid synthase (NCBI), at 853,113 to 854,396 _A0725 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1at 850.344 kb on - strand, within Rru_A0722at 850.368 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.804 kb on + strandat 850.804 kb on + strandat 850.804 kb on + strandat 850.805 kb on - strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.862 kb on + strandat 850.862 kb on + strandat 850.904 kb on + strandat 850.915 kb on + strandat 850.915 kb on + strandat 850.916 kb on - strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.032 kb on - strandat 851.061 kb on - strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.142 kb on + strand, within Rru_A0723at 851.143 kb on - strand, within Rru_A0723at 851.238 kb on + strand, within Rru_A0723at 851.397 kb on - strand, within Rru_A0723at 851.409 kb on + strand, within Rru_A0723at 851.491 kb on - strand, within Rru_A0723at 851.590 kb on - strand, within Rru_A0723at 851.594 kb on + strand, within Rru_A0723at 851.723 kb on + strand, within Rru_A0723at 851.841 kb on - strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.034 kb on - strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.127 kb on - strand, within Rru_A0723at 852.305 kb on + strandat 852.305 kb on + strandat 852.305 kb on + strandat 852.306 kb on - strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.360 kb on - strandat 852.361 kb on + strandat 852.362 kb on - strandat 852.362 kb on - strandat 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.506 kb on - strand, within Rru_A0724at 852.588 kb on - strand, within Rru_A0724at 852.637 kb on - strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.690 kb on - strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.783 kb on - strand, within Rru_A0724at 853.106 kb on + strandat 853.107 kb on - strandat 853.107 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
remove
850,344 - Rru_A0722 0.46 -1.5
850,368 - Rru_A0722 0.50 +0.1
850,505 - Rru_A0722 0.72 -1.6
850,505 - Rru_A0722 0.72 -1.0
850,804 + +0.1
850,804 + +0.1
850,804 + +0.1
850,805 - -0.9
850,848 + -2.9
850,848 + -2.9
850,848 + -3.5
850,848 + +0.1
850,848 + +0.1
850,862 + -0.9
850,862 + -3.0
850,904 + +0.1
850,915 + -0.6
850,915 + +1.1
850,916 - -0.3
851,031 + -0.9
851,031 + +0.1
851,031 + -1.5
851,031 + -0.2
851,032 - +0.1
851,061 - Rru_A0723 0.11 -1.4
851,127 + Rru_A0723 0.16 +0.1
851,127 + Rru_A0723 0.16 +0.1
851,128 - Rru_A0723 0.16 -0.9
851,128 - Rru_A0723 0.16 -1.3
851,130 - Rru_A0723 0.16 -0.4
851,130 - Rru_A0723 0.16 +0.1
851,142 + Rru_A0723 0.17 -0.5
851,143 - Rru_A0723 0.17 -2.1
851,238 + Rru_A0723 0.24 -0.9
851,397 - Rru_A0723 0.35 -0.5
851,409 + Rru_A0723 0.36 -1.7
851,491 - Rru_A0723 0.42 -0.7
851,590 - Rru_A0723 0.49 +0.9
851,594 + Rru_A0723 0.50 +0.1
851,723 + Rru_A0723 0.59 -0.9
851,841 - Rru_A0723 0.68 -2.2
851,928 + Rru_A0723 0.74 -0.5
851,928 + Rru_A0723 0.74 -1.7
852,027 + Rru_A0723 0.81 +0.1
852,027 + Rru_A0723 0.81 -0.9
852,033 + Rru_A0723 0.81 +0.1
852,033 + Rru_A0723 0.81 +0.1
852,034 - Rru_A0723 0.81 +0.1
852,126 + Rru_A0723 0.88 -0.7
852,126 + Rru_A0723 0.88 -0.7
852,126 + Rru_A0723 0.88 +0.1
852,127 - Rru_A0723 0.88 +0.1
852,305 + -1.1
852,305 + -0.8
852,305 + -1.4
852,306 - +0.1
852,359 + -0.5
852,359 + -1.3
852,359 + -0.9
852,360 - -1.4
852,361 + -0.9
852,362 - -1.3
852,362 - -1.7
852,503 + Rru_A0724 0.26 -1.6
852,503 + Rru_A0724 0.26 -0.8
852,503 + Rru_A0724 0.26 -1.3
852,504 - Rru_A0724 0.26 +0.1
852,504 - Rru_A0724 0.26 +0.6
852,506 - Rru_A0724 0.27 +0.1
852,588 - Rru_A0724 0.37 -3.2
852,637 - Rru_A0724 0.43 -0.5
852,653 + Rru_A0724 0.45 -0.8
852,653 + Rru_A0724 0.45 +0.1
852,689 + Rru_A0724 0.49 -1.5
852,689 + Rru_A0724 0.49 -1.4
852,690 - Rru_A0724 0.49 +0.1
852,749 + Rru_A0724 0.56 -1.0
852,749 + Rru_A0724 0.56 -0.8
852,750 - Rru_A0724 0.56 +0.1
852,750 - Rru_A0724 0.56 -1.9
852,782 + Rru_A0724 0.60 -1.2
852,782 + Rru_A0724 0.60 -1.8
852,782 + Rru_A0724 0.60 +0.1
852,782 + Rru_A0724 0.60 -1.4
852,782 + Rru_A0724 0.60 +0.1
852,782 + Rru_A0724 0.60 -1.2
852,783 - Rru_A0724 0.60 -1.7
853,106 + +0.1
853,107 - -1.2
853,107 - -2.9

Or see this region's nucleotide sequence