Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0712

Experiment: Succinic Acid; Light intensity 150 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0711 and Rru_A0712 are separated by 190 nucleotidesRru_A0712 and Rru_A0713 are separated by 115 nucleotides Rru_A0711: Rru_A0711 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 838,755 to 839,522 _A0711 Rru_A0712: Rru_A0712 - Transcriptional Regulator, XRE family (NCBI), at 839,713 to 840,306 _A0712 Rru_A0713: Rru_A0713 - Protein of unknown function DUF833 (NCBI), at 840,422 to 841,198 _A0713 Position (kb) 839 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1at 838.736 kb on + strandat 838.736 kb on + strandat 838.737 kb on - strandat 839.652 kb on - strandat 839.682 kb on + strandat 839.682 kb on + strandat 839.683 kb on - strandat 839.683 kb on - strandat 839.683 kb on - strandat 839.683 kb on - strandat 840.206 kb on + strand, within Rru_A0712at 840.209 kb on + strand, within Rru_A0712at 840.209 kb on + strand, within Rru_A0712at 840.367 kb on + strandat 840.367 kb on + strandat 840.368 kb on - strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.374 kb on + strandat 840.456 kb on + strandat 840.457 kb on - strandat 840.489 kb on - strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.493 kb on - strandat 840.867 kb on + strand, within Rru_A0713at 840.923 kb on - strand, within Rru_A0713at 841.192 kb on + strandat 841.192 kb on + strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.283 kb on - strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.288 kb on - strandat 841.293 kb on + strandat 841.305 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
remove
838,736 + +0.1
838,736 + +0.1
838,737 - +0.1
839,652 - -0.7
839,682 + -0.3
839,682 + -1.1
839,683 - -0.7
839,683 - -1.2
839,683 - -1.0
839,683 - -0.7
840,206 + Rru_A0712 0.83 +0.1
840,209 + Rru_A0712 0.84 +0.1
840,209 + Rru_A0712 0.84 +0.1
840,367 + +0.1
840,367 + -1.2
840,368 - -3.2
840,370 + -0.8
840,370 + -2.6
840,370 + +0.1
840,370 + +0.1
840,370 + +0.1
840,370 + -1.6
840,370 + -0.4
840,370 + -1.7
840,371 - +0.1
840,371 - -0.9
840,371 - -1.1
840,371 - +0.1
840,371 - -0.2
840,374 + -1.8
840,456 + -2.3
840,457 - +0.1
840,489 - +0.1
840,492 + -1.0
840,492 + +0.1
840,492 + -1.3
840,493 - -0.9
840,867 + Rru_A0713 0.57 +0.1
840,923 - Rru_A0713 0.64 +0.1
841,192 + +0.1
841,192 + +0.1
841,193 - +0.1
841,193 - +0.1
841,193 - +0.1
841,283 - -0.6
841,287 + +0.1
841,287 + -1.1
841,287 + +0.1
841,288 - -0.7
841,293 + -0.3
841,305 - -1.8

Or see this region's nucleotide sequence