Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0706 and Rru_A0707 are separated by 46 nucleotides Rru_A0707 and Rru_A0708 are separated by 118 nucleotides Rru_A0708 and Rru_A0709 overlap by 4 nucleotides Rru_A0709 and Rru_A0710 are separated by 29 nucleotides
Rru_A0706: Rru_A0706 - RarD protein (NCBI), at 834,145 to 835,077
_A0706
Rru_A0707: Rru_A0707 - BolA-like protein (NCBI), at 835,124 to 835,357
_A0707
Rru_A0708: Rru_A0708 - Phosphoribosylformylglycinamidine synthase II (NCBI), at 835,476 to 837,698
_A0708
Rru_A0709: Rru_A0709 - Phosphoribosylformylglycinamidine synthase I (NCBI), at 837,695 to 838,387
_A0709
Rru_A0710: Rru_A0710 - Phosphoribosylformylglycinamidine synthetase PurS (NCBI), at 838,417 to 838,677
_A0710
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.530 kb on - strand, within Rru_A0706 at 834.551 kb on + strand, within Rru_A0706 at 834.552 kb on - strand, within Rru_A0706 at 834.552 kb on - strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.726 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.993 kb on - strand at 835.096 kb on + strand at 835.400 kb on - strand at 835.400 kb on - strand at 835.489 kb on + strand at 835.490 kb on - strand at 835.663 kb on + strand at 837.946 kb on - strand, within Rru_A0709 at 838.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 834,530 - Rru_A0706 0.41 -0.4 834,551 + Rru_A0706 0.44 +0.1 834,552 - Rru_A0706 0.44 -3.6 834,552 - Rru_A0706 0.44 +0.1 834,722 + Rru_A0706 0.62 -0.7 834,722 + Rru_A0706 0.62 -1.0 834,722 + Rru_A0706 0.62 -2.0 834,722 + Rru_A0706 0.62 +0.1 834,723 - Rru_A0706 0.62 -0.6 834,723 - Rru_A0706 0.62 -1.5 834,723 - Rru_A0706 0.62 +0.1 834,723 - Rru_A0706 0.62 -1.5 834,723 - Rru_A0706 0.62 -1.3 834,726 - Rru_A0706 0.62 -1.7 834,886 - Rru_A0706 0.79 -2.4 834,886 - Rru_A0706 0.79 -1.7 834,886 - Rru_A0706 0.79 +1.1 834,888 + Rru_A0706 0.80 +0.1 834,888 + Rru_A0706 0.80 -0.7 834,888 + Rru_A0706 0.80 -2.1 834,888 + Rru_A0706 0.80 -1.1 834,889 - Rru_A0706 0.80 -0.5 834,889 - Rru_A0706 0.80 +0.1 834,889 - Rru_A0706 0.80 -0.9 834,993 - +0.5 835,096 + -0.9 835,400 - -0.9 835,400 - +0.1 835,489 + -0.9 835,490 - -1.5 835,663 + +0.1 837,946 - Rru_A0709 0.36 -0.4 838,320 - +0.1
Or see this region's nucleotide sequence