Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0454

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0453 and Rru_A0454 are separated by 247 nucleotidesRru_A0454 and Rru_A0455 are separated by 37 nucleotidesRru_A0455 and Rru_A0456 are separated by 10 nucleotidesRru_A0456 and Rru_A0457 are separated by 1 nucleotides Rru_A0453: Rru_A0453 - HNH endonuclease (NCBI), at 530,734 to 534,255 _A0453 Rru_A0454: Rru_A0454 - Leucyl aminopeptidase (NCBI), at 534,503 to 536,005 _A0454 Rru_A0455: Rru_A0455 - NUDIX hydrolase (NCBI), at 536,043 to 536,558 _A0455 Rru_A0456: Rru_A0456 - Predicted transcriptional regulator (NCBI), at 536,569 to 536,856 _A0456 Rru_A0457: Rru_A0457 - Protein of unknown function DUF891 (NCBI), at 536,858 to 537,154 _A0457 Position (kb) 534 535 536 537Strain fitness (log2 ratio) -2 -1 0 1at 533.628 kb on + strand, within Rru_A0453at 533.629 kb on - strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.631 kb on - strand, within Rru_A0453at 534.373 kb on + strandat 534.912 kb on - strand, within Rru_A0454at 534.927 kb on - strand, within Rru_A0454at 535.013 kb on + strand, within Rru_A0454at 535.089 kb on - strand, within Rru_A0454at 535.245 kb on - strand, within Rru_A0454at 535.339 kb on + strand, within Rru_A0454at 535.575 kb on - strand, within Rru_A0454at 535.760 kb on + strand, within Rru_A0454at 535.970 kb on + strandat 535.970 kb on + strandat 535.971 kb on - strandat 535.971 kb on - strandat 535.971 kb on - strandat 536.003 kb on + strandat 536.004 kb on - strandat 536.004 kb on - strandat 536.079 kb on - strandat 536.193 kb on + strand, within Rru_A0455at 536.193 kb on + strand, within Rru_A0455at 536.193 kb on + strand, within Rru_A0455at 536.193 kb on + strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.194 kb on - strand, within Rru_A0455at 536.316 kb on + strand, within Rru_A0455at 536.316 kb on + strand, within Rru_A0455at 536.316 kb on + strand, within Rru_A0455at 536.316 kb on + strand, within Rru_A0455at 536.317 kb on - strand, within Rru_A0455at 536.317 kb on - strand, within Rru_A0455at 536.317 kb on - strand, within Rru_A0455at 536.318 kb on + strand, within Rru_A0455at 536.751 kb on + strand, within Rru_A0456at 536.751 kb on + strand, within Rru_A0456at 536.751 kb on + strand, within Rru_A0456at 536.752 kb on - strand, within Rru_A0456at 536.752 kb on - strand, within Rru_A0456at 536.753 kb on + strand, within Rru_A0456at 536.753 kb on + strand, within Rru_A0456at 536.753 kb on + strand, within Rru_A0456at 536.753 kb on + strand, within Rru_A0456at 536.754 kb on - strand, within Rru_A0456at 536.754 kb on - strand, within Rru_A0456at 536.834 kb on + strandat 536.834 kb on + strandat 536.835 kb on - strandat 536.835 kb on - strandat 536.835 kb on - strandat 536.992 kb on - strand, within Rru_A0457

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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533,628 + Rru_A0453 0.82 -0.9
533,629 - Rru_A0453 0.82 +0.1
533,630 + Rru_A0453 0.82 +0.1
533,630 + Rru_A0453 0.82 -1.5
533,630 + Rru_A0453 0.82 -1.5
533,630 + Rru_A0453 0.82 -0.5
533,631 - Rru_A0453 0.82 +0.1
534,373 + -1.1
534,912 - Rru_A0454 0.27 +0.1
534,927 - Rru_A0454 0.28 +1.1
535,013 + Rru_A0454 0.34 -0.5
535,089 - Rru_A0454 0.39 +1.7
535,245 - Rru_A0454 0.49 +0.1
535,339 + Rru_A0454 0.56 +0.1
535,575 - Rru_A0454 0.71 -0.9
535,760 + Rru_A0454 0.84 +0.1
535,970 + +0.1
535,970 + -0.9
535,971 - -0.9
535,971 - +0.1
535,971 - +0.1
536,003 + -1.1
536,004 - +0.1
536,004 - +0.1
536,079 - +0.1
536,193 + Rru_A0455 0.29 -1.1
536,193 + Rru_A0455 0.29 -1.0
536,193 + Rru_A0455 0.29 +0.1
536,193 + Rru_A0455 0.29 -0.4
536,194 - Rru_A0455 0.29 -0.6
536,194 - Rru_A0455 0.29 +0.1
536,194 - Rru_A0455 0.29 -2.1
536,194 - Rru_A0455 0.29 -0.7
536,194 - Rru_A0455 0.29 -0.9
536,194 - Rru_A0455 0.29 -0.9
536,316 + Rru_A0455 0.53 -0.9
536,316 + Rru_A0455 0.53 -2.6
536,316 + Rru_A0455 0.53 -1.9
536,316 + Rru_A0455 0.53 -2.2
536,317 - Rru_A0455 0.53 +0.1
536,317 - Rru_A0455 0.53 -0.9
536,317 - Rru_A0455 0.53 -1.4
536,318 + Rru_A0455 0.53 +0.1
536,751 + Rru_A0456 0.63 +0.1
536,751 + Rru_A0456 0.63 +0.1
536,751 + Rru_A0456 0.63 +0.1
536,752 - Rru_A0456 0.64 +0.1
536,752 - Rru_A0456 0.64 +0.1
536,753 + Rru_A0456 0.64 -0.4
536,753 + Rru_A0456 0.64 -0.8
536,753 + Rru_A0456 0.64 +0.1
536,753 + Rru_A0456 0.64 -0.9
536,754 - Rru_A0456 0.64 -1.2
536,754 - Rru_A0456 0.64 +0.1
536,834 + +0.1
536,834 + -0.5
536,835 - -1.1
536,835 - +0.1
536,835 - -0.3
536,992 - Rru_A0457 0.45 -0.7

Or see this region's nucleotide sequence