Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0430 and Rru_A0431 overlap by 4 nucleotides Rru_A0431 and Rru_A0432 overlap by 4 nucleotides
Rru_A0430: Rru_A0430 - Ribonuclease BN (NCBI), at 502,245 to 503,186
_A0430
Rru_A0431: Rru_A0431 - 16S rRNA dimethylase (NCBI), at 503,183 to 504,049
_A0431
Rru_A0432: Rru_A0432 - 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI), at 504,046 to 505,080
_A0432
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 502.276 kb on + strand at 502.276 kb on + strand at 502.277 kb on - strand at 502.277 kb on - strand at 502.277 kb on - strand at 502.449 kb on + strand, within Rru_A0430 at 502.449 kb on + strand, within Rru_A0430 at 502.450 kb on - strand, within Rru_A0430 at 502.507 kb on - strand, within Rru_A0430 at 502.668 kb on + strand, within Rru_A0430 at 502.992 kb on + strand, within Rru_A0430 at 502.992 kb on + strand, within Rru_A0430 at 502.993 kb on - strand, within Rru_A0430 at 502.993 kb on - strand, within Rru_A0430 at 502.993 kb on - strand, within Rru_A0430 at 503.014 kb on - strand, within Rru_A0430 at 503.014 kb on - strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.025 kb on + strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.026 kb on - strand, within Rru_A0430 at 503.031 kb on - strand, within Rru_A0430 at 503.079 kb on + strand, within Rru_A0430 at 504.249 kb on - strand, within Rru_A0432 at 504.249 kb on - strand, within Rru_A0432 at 504.249 kb on - strand, within Rru_A0432
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 502,276 + +0.1 502,276 + -0.9 502,277 - -1.2 502,277 - -1.6 502,277 - -2.0 502,449 + Rru_A0430 0.22 -0.6 502,449 + Rru_A0430 0.22 -1.6 502,450 - Rru_A0430 0.22 +0.1 502,507 - Rru_A0430 0.28 +0.2 502,668 + Rru_A0430 0.45 +0.1 502,992 + Rru_A0430 0.79 +0.1 502,992 + Rru_A0430 0.79 +0.1 502,993 - Rru_A0430 0.79 +0.1 502,993 - Rru_A0430 0.79 -0.8 502,993 - Rru_A0430 0.79 -3.1 503,014 - Rru_A0430 0.82 +0.1 503,014 - Rru_A0430 0.82 +0.1 503,025 + Rru_A0430 0.83 -0.9 503,025 + Rru_A0430 0.83 -1.8 503,025 + Rru_A0430 0.83 -1.2 503,025 + Rru_A0430 0.83 -0.8 503,025 + Rru_A0430 0.83 -0.7 503,025 + Rru_A0430 0.83 +0.1 503,025 + Rru_A0430 0.83 +0.1 503,025 + Rru_A0430 0.83 -0.8 503,025 + Rru_A0430 0.83 -0.4 503,026 - Rru_A0430 0.83 +0.1 503,026 - Rru_A0430 0.83 -1.2 503,026 - Rru_A0430 0.83 -0.9 503,026 - Rru_A0430 0.83 -0.7 503,026 - Rru_A0430 0.83 -0.1 503,026 - Rru_A0430 0.83 -0.7 503,026 - Rru_A0430 0.83 -0.1 503,026 - Rru_A0430 0.83 -1.2 503,026 - Rru_A0430 0.83 -0.7 503,026 - Rru_A0430 0.83 -2.3 503,026 - Rru_A0430 0.83 -1.1 503,031 - Rru_A0430 0.83 -1.4 503,079 + Rru_A0430 0.89 +0.1 504,249 - Rru_A0432 0.20 +1.2 504,249 - Rru_A0432 0.20 +1.7 504,249 - Rru_A0432 0.20 +1.1
Or see this region's nucleotide sequence