Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0137

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0136 and Rru_A0137 are separated by 188 nucleotidesRru_A0137 and Rru_A0138 are separated by 25 nucleotides Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346 _A0136 Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587 _A0137 Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004 _A0138 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 159.678 kb on + strand, within Rru_A0136at 159.963 kb on + strand, within Rru_A0136at 159.963 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.201 kb on - strand, within Rru_A0136at 160.405 kb on + strandat 160.405 kb on + strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.412 kb on + strandat 160.413 kb on - strandat 160.685 kb on + strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.951 kb on + strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137at 161.537 kb on + strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.838 kb on + strand, within Rru_A0138at 161.839 kb on - strand, within Rru_A0138at 161.880 kb on + strand, within Rru_A0138at 161.952 kb on + strand, within Rru_A0138at 161.953 kb on - strand, within Rru_A0138at 162.083 kb on + strand, within Rru_A0138at 162.084 kb on - strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.371 kb on + strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.542 kb on + strand, within Rru_A0138at 162.543 kb on - strand, within Rru_A0138

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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159,678 + Rru_A0136 0.28 +0.1
159,963 + Rru_A0136 0.59 -1.9
159,963 + Rru_A0136 0.59 -1.0
160,055 + Rru_A0136 0.69 -1.3
160,055 + Rru_A0136 0.69 -1.5
160,055 + Rru_A0136 0.69 -1.9
160,055 + Rru_A0136 0.69 +0.1
160,056 - Rru_A0136 0.69 -1.6
160,056 - Rru_A0136 0.69 +0.1
160,056 - Rru_A0136 0.69 -0.4
160,200 + Rru_A0136 0.84 +0.1
160,200 + Rru_A0136 0.84 +0.1
160,200 + Rru_A0136 0.84 -1.1
160,201 - Rru_A0136 0.84 +0.1
160,405 + +0.1
160,405 + +0.1
160,406 - -0.1
160,406 - -1.5
160,412 + -1.6
160,413 - -0.6
160,685 + Rru_A0137 0.14 +0.1
160,686 - Rru_A0137 0.14 +0.1
160,686 - Rru_A0137 0.14 +0.1
160,816 + Rru_A0137 0.27 +0.1
160,816 + Rru_A0137 0.27 -0.9
160,887 - Rru_A0137 0.33 +0.1
160,887 - Rru_A0137 0.33 +0.1
160,887 - Rru_A0137 0.33 +0.1
160,888 + Rru_A0137 0.34 +0.1
160,888 + Rru_A0137 0.34 +0.1
160,949 + Rru_A0137 0.39 +0.1
160,949 + Rru_A0137 0.39 -2.2
160,949 + Rru_A0137 0.39 +0.1
160,949 + Rru_A0137 0.39 -1.7
160,950 - Rru_A0137 0.39 -2.7
160,950 - Rru_A0137 0.39 +0.1
160,950 - Rru_A0137 0.39 -0.9
160,950 - Rru_A0137 0.39 -1.5
160,951 + Rru_A0137 0.40 +0.1
160,952 - Rru_A0137 0.40 +0.1
160,952 - Rru_A0137 0.40 +0.1
160,952 - Rru_A0137 0.40 +0.1
161,321 + Rru_A0137 0.75 +0.1
161,321 + Rru_A0137 0.75 +0.1
161,322 - Rru_A0137 0.75 +0.1
161,322 - Rru_A0137 0.75 -1.5
161,537 + +1.7
161,538 - +0.1
161,538 - -1.7
161,538 - -1.4
161,538 - -1.4
161,838 + Rru_A0138 0.16 +0.1
161,839 - Rru_A0138 0.16 -0.6
161,880 + Rru_A0138 0.19 +0.1
161,952 + Rru_A0138 0.24 +0.1
161,953 - Rru_A0138 0.24 -0.2
162,083 + Rru_A0138 0.34 +0.1
162,084 - Rru_A0138 0.34 +0.1
162,198 + Rru_A0138 0.42 -1.4
162,198 + Rru_A0138 0.42 +0.1
162,198 + Rru_A0138 0.42 -0.9
162,198 + Rru_A0138 0.42 -0.9
162,199 - Rru_A0138 0.42 +0.1
162,199 - Rru_A0138 0.42 -1.2
162,199 - Rru_A0138 0.42 -1.5
162,199 - Rru_A0138 0.42 +0.1
162,371 + Rru_A0138 0.54 -2.5
162,372 - Rru_A0138 0.55 -0.8
162,372 - Rru_A0138 0.55 +0.1
162,542 + Rru_A0138 0.67 -1.5
162,543 - Rru_A0138 0.67 -1.9

Or see this region's nucleotide sequence