Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25125

Experiment: Cytidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS25115 and BWI76_RS25120 are separated by 153 nucleotidesBWI76_RS25120 and BWI76_RS25125 are separated by 14 nucleotidesBWI76_RS25125 and BWI76_RS25130 are separated by 229 nucleotides BWI76_RS25115: BWI76_RS25115 - argininosuccinate synthase, at 5,227,953 to 5,229,296 _RS25115 BWI76_RS25120: BWI76_RS25120 - tRNA-Leu, at 5,229,450 to 5,229,536 _RS25120 BWI76_RS25125: BWI76_RS25125 - preprotein translocase subunit SecG, at 5,229,551 to 5,229,880 _RS25125 BWI76_RS25130: BWI76_RS25130 - phosphoglucosamine mutase, at 5,230,110 to 5,231,447 _RS25130 Position (kb) 5229 5230Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5228.585 kb on - strand, within BWI76_RS25115at 5228.994 kb on + strand, within BWI76_RS25115at 5229.002 kb on - strand, within BWI76_RS25115at 5229.007 kb on - strand, within BWI76_RS25115at 5229.103 kb on - strand, within BWI76_RS25115at 5230.108 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
remove
5,228,585 - BWI76_RS25115 0.47 -5.0
5,228,994 + BWI76_RS25115 0.77 -5.1
5,229,002 - BWI76_RS25115 0.78 -3.7
5,229,007 - BWI76_RS25115 0.78 -5.5
5,229,103 - BWI76_RS25115 0.86 -0.2
5,230,108 + -0.0

Or see this region's nucleotide sequence