Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30010

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30005 and AO356_30010 are separated by 0 nucleotidesAO356_30010 and AO356_30015 overlap by 32 nucleotides AO356_30005: AO356_30005 - diguanylate cyclase, at 7,002,751 to 7,003,509 _30005 AO356_30010: AO356_30010 - transcriptional regulator, at 7,003,510 to 7,004,181 _30010 AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229 _30015 Position (kb) 7003 7004 7005Strain fitness (log2 ratio) -1 0 1at 7002.748 kb on + strandat 7002.748 kb on + strandat 7002.824 kb on + strandat 7002.825 kb on - strandat 7002.825 kb on - strandat 7002.920 kb on + strand, within AO356_30005at 7002.921 kb on - strand, within AO356_30005at 7002.974 kb on + strand, within AO356_30005at 7002.975 kb on - strand, within AO356_30005at 7002.975 kb on - strand, within AO356_30005at 7002.975 kb on - strand, within AO356_30005at 7003.083 kb on - strand, within AO356_30005at 7003.122 kb on + strand, within AO356_30005at 7003.188 kb on - strand, within AO356_30005at 7003.343 kb on + strand, within AO356_30005at 7003.343 kb on + strand, within AO356_30005at 7003.344 kb on - strand, within AO356_30005at 7003.511 kb on + strandat 7003.511 kb on + strandat 7003.512 kb on - strandat 7003.512 kb on - strandat 7003.659 kb on + strand, within AO356_30010at 7003.660 kb on - strand, within AO356_30010at 7003.742 kb on + strand, within AO356_30010at 7003.875 kb on - strand, within AO356_30010at 7003.875 kb on - strand, within AO356_30010at 7004.161 kb on + strandat 7004.162 kb on - strandat 7004.228 kb on + strandat 7004.229 kb on - strandat 7004.678 kb on + strand, within AO356_30015at 7004.678 kb on + strand, within AO356_30015at 7004.738 kb on + strand, within AO356_30015at 7004.738 kb on + strand, within AO356_30015at 7004.804 kb on - strand, within AO356_30015

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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7,002,748 + -0.8
7,002,748 + -0.3
7,002,824 + +0.7
7,002,825 - -0.3
7,002,825 - +1.0
7,002,920 + AO356_30005 0.22 +0.5
7,002,921 - AO356_30005 0.22 -0.1
7,002,974 + AO356_30005 0.29 +0.2
7,002,975 - AO356_30005 0.30 +0.2
7,002,975 - AO356_30005 0.30 +0.1
7,002,975 - AO356_30005 0.30 -0.5
7,003,083 - AO356_30005 0.44 -0.0
7,003,122 + AO356_30005 0.49 +0.0
7,003,188 - AO356_30005 0.58 +0.4
7,003,343 + AO356_30005 0.78 -0.1
7,003,343 + AO356_30005 0.78 -0.3
7,003,344 - AO356_30005 0.78 +0.4
7,003,511 + -0.4
7,003,511 + -0.3
7,003,512 - +0.7
7,003,512 - +0.7
7,003,659 + AO356_30010 0.22 +1.1
7,003,660 - AO356_30010 0.22 +0.2
7,003,742 + AO356_30010 0.35 +0.7
7,003,875 - AO356_30010 0.54 -0.1
7,003,875 - AO356_30010 0.54 +1.0
7,004,161 + -0.8
7,004,162 - +0.1
7,004,228 + -0.5
7,004,229 - +0.2
7,004,678 + AO356_30015 0.49 +1.0
7,004,678 + AO356_30015 0.49 +1.2
7,004,738 + AO356_30015 0.54 +0.8
7,004,738 + AO356_30015 0.54 -0.2
7,004,804 - AO356_30015 0.61 +0.4

Or see this region's nucleotide sequence