Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28970

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28965 and AO356_28970 are separated by 8 nucleotidesAO356_28970 and AO356_28975 are separated by 127 nucleotides AO356_28965: AO356_28965 - monooxygenase, at 6,733,193 to 6,734,380 _28965 AO356_28970: AO356_28970 - Fis family transcriptional regulator, at 6,734,389 to 6,735,492 _28970 AO356_28975: AO356_28975 - alkanesulfonate monooxygenase, at 6,735,620 to 6,736,750 _28975 Position (kb) 6734 6735 6736Strain fitness (log2 ratio) -2 -1 0 1at 6733.815 kb on + strand, within AO356_28965at 6733.856 kb on - strand, within AO356_28965at 6733.919 kb on - strand, within AO356_28965at 6733.953 kb on - strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965at 6734.312 kb on + strandat 6734.313 kb on - strandat 6734.379 kb on - strandat 6734.466 kb on + strandat 6734.466 kb on + strandat 6734.467 kb on - strandat 6734.492 kb on + strandat 6734.493 kb on - strandat 6734.493 kb on - strandat 6734.493 kb on - strandat 6734.493 kb on - strandat 6734.923 kb on + strand, within AO356_28970at 6735.016 kb on + strand, within AO356_28970at 6735.082 kb on + strand, within AO356_28970at 6735.082 kb on + strand, within AO356_28970at 6735.083 kb on - strand, within AO356_28970at 6735.500 kb on - strandat 6736.004 kb on + strand, within AO356_28975at 6736.004 kb on + strand, within AO356_28975at 6736.005 kb on - strand, within AO356_28975at 6736.142 kb on + strand, within AO356_28975at 6736.200 kb on - strand, within AO356_28975at 6736.403 kb on + strand, within AO356_28975at 6736.447 kb on - strand, within AO356_28975

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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6,733,815 + AO356_28965 0.52 +0.1
6,733,856 - AO356_28965 0.56 -1.2
6,733,919 - AO356_28965 0.61 +0.4
6,733,953 - AO356_28965 0.64 +1.1
6,734,015 + AO356_28965 0.69 +0.2
6,734,015 + AO356_28965 0.69 +0.1
6,734,015 + AO356_28965 0.69 +0.6
6,734,015 + AO356_28965 0.69 +0.5
6,734,015 + AO356_28965 0.69 +0.9
6,734,016 - AO356_28965 0.69 +0.4
6,734,016 - AO356_28965 0.69 +0.1
6,734,016 - AO356_28965 0.69 +0.6
6,734,312 + +0.0
6,734,313 - +0.2
6,734,379 - -0.0
6,734,466 + -0.1
6,734,466 + +0.1
6,734,467 - -0.2
6,734,492 + -0.2
6,734,493 - +0.3
6,734,493 - -0.6
6,734,493 - -0.5
6,734,493 - +0.1
6,734,923 + AO356_28970 0.48 -1.8
6,735,016 + AO356_28970 0.57 -0.7
6,735,082 + AO356_28970 0.63 +0.3
6,735,082 + AO356_28970 0.63 -0.1
6,735,083 - AO356_28970 0.63 -1.4
6,735,500 - +0.7
6,736,004 + AO356_28975 0.34 -0.2
6,736,004 + AO356_28975 0.34 +0.7
6,736,005 - AO356_28975 0.34 +0.8
6,736,142 + AO356_28975 0.46 +0.5
6,736,200 - AO356_28975 0.51 -0.2
6,736,403 + AO356_28975 0.69 -0.6
6,736,447 - AO356_28975 0.73 +0.1

Or see this region's nucleotide sequence