Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10400 and AO356_10405 are separated by 109 nucleotides AO356_10405 and AO356_10410 overlap by 4 nucleotides AO356_10410 and AO356_10415 overlap by 4 nucleotides AO356_10415 and AO356_10420 overlap by 20 nucleotides
AO356_10400: AO356_10400 - ATP-binding protein, at 2,347,964 to 2,349,124
_10400
AO356_10405: AO356_10405 - glutamine ABC transporter substrate-binding protein, at 2,349,234 to 2,350,115
_10405
AO356_10410: AO356_10410 - glutamine ABC transporter ATP-binding protein, at 2,350,112 to 2,350,894
_10410
AO356_10415: AO356_10415 - glutamine ABC transporter permease, at 2,350,891 to 2,351,550
_10415
AO356_10420: AO356_10420 - polar amino acid ABC transporter permease, at 2,351,531 to 2,352,196
_10420
Position (kb)
2350
2351 Strain fitness (log2 ratio)
-2
-1
0
1 at 2349.135 kb on + strand at 2349.136 kb on - strand at 2349.171 kb on + strand at 2349.171 kb on + strand at 2349.171 kb on + strand at 2349.171 kb on + strand at 2349.171 kb on + strand at 2349.172 kb on - strand at 2349.172 kb on - strand at 2349.172 kb on - strand at 2349.172 kb on - strand at 2349.216 kb on + strand at 2349.216 kb on + strand at 2349.216 kb on + strand at 2349.216 kb on + strand at 2349.217 kb on - strand at 2349.217 kb on - strand at 2349.217 kb on - strand at 2349.217 kb on - strand at 2349.217 kb on - strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.307 kb on + strand at 2349.308 kb on - strand at 2349.308 kb on - strand at 2349.308 kb on - strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.316 kb on + strand at 2349.317 kb on - strand at 2349.317 kb on - strand at 2349.331 kb on + strand, within AO356_10405 at 2349.331 kb on + strand, within AO356_10405 at 2349.331 kb on + strand, within AO356_10405 at 2349.331 kb on + strand, within AO356_10405 at 2349.331 kb on + strand, within AO356_10405 at 2349.331 kb on + strand, within AO356_10405 at 2349.332 kb on - strand, within AO356_10405 at 2349.332 kb on - strand, within AO356_10405 at 2349.332 kb on - strand, within AO356_10405 at 2349.332 kb on - strand, within AO356_10405 at 2349.387 kb on - strand, within AO356_10405 at 2349.502 kb on + strand, within AO356_10405 at 2349.503 kb on - strand, within AO356_10405 at 2349.503 kb on - strand, within AO356_10405 at 2349.503 kb on - strand, within AO356_10405 at 2349.503 kb on - strand, within AO356_10405 at 2349.898 kb on + strand, within AO356_10405 at 2349.898 kb on + strand, within AO356_10405 at 2349.898 kb on + strand, within AO356_10405 at 2349.899 kb on - strand, within AO356_10405 at 2349.899 kb on - strand, within AO356_10405 at 2349.988 kb on + strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2349.989 kb on - strand, within AO356_10405 at 2350.046 kb on + strand at 2350.086 kb on + strand at 2350.086 kb on + strand at 2350.086 kb on + strand at 2350.086 kb on + strand at 2350.087 kb on - strand at 2350.152 kb on - strand at 2350.164 kb on + strand at 2350.165 kb on - strand at 2350.165 kb on - strand at 2350.213 kb on + strand, within AO356_10410 at 2350.629 kb on + strand, within AO356_10410 at 2350.629 kb on + strand, within AO356_10410 at 2350.629 kb on + strand, within AO356_10410 at 2350.630 kb on - strand, within AO356_10410 at 2350.630 kb on - strand, within AO356_10410 at 2350.630 kb on - strand, within AO356_10410 at 2350.630 kb on - strand, within AO356_10410 at 2350.630 kb on - strand, within AO356_10410 at 2350.762 kb on + strand, within AO356_10410 at 2350.763 kb on - strand, within AO356_10410 at 2350.944 kb on - strand at 2350.950 kb on + strand at 2350.950 kb on + strand at 2350.950 kb on + strand at 2350.950 kb on + strand at 2350.951 kb on - strand at 2350.951 kb on - strand at 2350.951 kb on - strand at 2350.979 kb on + strand, within AO356_10415 at 2350.980 kb on - strand, within AO356_10415 at 2350.980 kb on - strand, within AO356_10415 at 2350.997 kb on + strand, within AO356_10415 at 2350.997 kb on + strand, within AO356_10415 at 2350.997 kb on + strand, within AO356_10415 at 2350.998 kb on - strand, within AO356_10415 at 2350.998 kb on - strand, within AO356_10415 at 2351.088 kb on - strand, within AO356_10415 at 2351.088 kb on - strand, within AO356_10415 at 2351.088 kb on - strand, within AO356_10415 at 2351.224 kb on + strand, within AO356_10415 at 2351.225 kb on - strand, within AO356_10415 at 2351.255 kb on - strand, within AO356_10415 at 2351.333 kb on + strand, within AO356_10415 at 2351.333 kb on + strand, within AO356_10415 at 2351.333 kb on + strand, within AO356_10415 at 2351.334 kb on - strand, within AO356_10415 at 2351.375 kb on + strand, within AO356_10415 at 2351.429 kb on + strand, within AO356_10415 at 2351.429 kb on + strand, within AO356_10415 at 2351.430 kb on - strand, within AO356_10415 at 2351.640 kb on + strand, within AO356_10420 at 2351.641 kb on - strand, within AO356_10420 at 2351.641 kb on - strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.649 kb on + strand, within AO356_10420 at 2351.650 kb on - strand, within AO356_10420 at 2351.650 kb on - strand, within AO356_10420 at 2351.650 kb on - strand, within AO356_10420 at 2351.650 kb on - strand, within AO356_10420 at 2351.652 kb on + strand, within AO356_10420 at 2351.652 kb on + strand, within AO356_10420 at 2351.664 kb on + strand, within AO356_10420 at 2351.664 kb on + strand, within AO356_10420 at 2351.665 kb on - strand, within AO356_10420 at 2351.665 kb on - strand, within AO356_10420 at 2351.665 kb on - strand, within AO356_10420 at 2351.679 kb on + strand, within AO356_10420 at 2351.679 kb on + strand, within AO356_10420 at 2351.679 kb on + strand, within AO356_10420 at 2351.679 kb on + strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.680 kb on - strand, within AO356_10420 at 2351.793 kb on + strand, within AO356_10420 at 2351.793 kb on + strand, within AO356_10420 at 2351.794 kb on - strand, within AO356_10420
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 2,349,135 + -0.4 2,349,136 - +0.4 2,349,171 + +0.1 2,349,171 + +0.7 2,349,171 + +0.7 2,349,171 + +0.5 2,349,171 + +0.5 2,349,172 - +0.1 2,349,172 - +0.0 2,349,172 - +0.8 2,349,172 - -0.1 2,349,216 + +0.6 2,349,216 + -0.2 2,349,216 + +0.3 2,349,216 + -0.3 2,349,217 - -0.3 2,349,217 - +0.1 2,349,217 - -0.2 2,349,217 - -0.2 2,349,217 - +0.6 2,349,307 + -1.3 2,349,307 + +0.1 2,349,307 + -0.3 2,349,307 + -1.6 2,349,307 + +0.4 2,349,307 + -0.1 2,349,307 + +1.1 2,349,307 + +0.3 2,349,308 - +0.2 2,349,308 - +0.8 2,349,308 - +0.1 2,349,316 + +0.6 2,349,316 + -1.0 2,349,316 + -0.3 2,349,316 + -0.1 2,349,316 + +1.0 2,349,316 + +1.2 2,349,316 + -0.2 2,349,317 - -0.4 2,349,317 - -0.3 2,349,331 + AO356_10405 0.11 -0.9 2,349,331 + AO356_10405 0.11 +0.2 2,349,331 + AO356_10405 0.11 +0.4 2,349,331 + AO356_10405 0.11 +0.3 2,349,331 + AO356_10405 0.11 -0.0 2,349,331 + AO356_10405 0.11 -0.2 2,349,332 - AO356_10405 0.11 +0.2 2,349,332 - AO356_10405 0.11 +0.3 2,349,332 - AO356_10405 0.11 -1.7 2,349,332 - AO356_10405 0.11 -0.5 2,349,387 - AO356_10405 0.17 +0.5 2,349,502 + AO356_10405 0.30 +0.5 2,349,503 - AO356_10405 0.30 +0.4 2,349,503 - AO356_10405 0.30 -0.2 2,349,503 - AO356_10405 0.30 -1.2 2,349,503 - AO356_10405 0.30 -0.1 2,349,898 + AO356_10405 0.75 -0.9 2,349,898 + AO356_10405 0.75 +0.5 2,349,898 + AO356_10405 0.75 +0.0 2,349,899 - AO356_10405 0.75 +0.8 2,349,899 - AO356_10405 0.75 +1.5 2,349,988 + AO356_10405 0.85 -0.7 2,349,989 - AO356_10405 0.86 -0.1 2,349,989 - AO356_10405 0.86 -1.4 2,349,989 - AO356_10405 0.86 +0.5 2,349,989 - AO356_10405 0.86 -1.0 2,349,989 - AO356_10405 0.86 +0.3 2,349,989 - AO356_10405 0.86 -0.3 2,350,046 + +0.3 2,350,086 + -0.4 2,350,086 + -0.6 2,350,086 + +0.5 2,350,086 + -0.0 2,350,087 - +0.5 2,350,152 - -0.5 2,350,164 + +0.3 2,350,165 - -0.8 2,350,165 - -0.8 2,350,213 + AO356_10410 0.13 +0.1 2,350,629 + AO356_10410 0.66 -0.2 2,350,629 + AO356_10410 0.66 -0.1 2,350,629 + AO356_10410 0.66 -0.9 2,350,630 - AO356_10410 0.66 -0.9 2,350,630 - AO356_10410 0.66 -2.0 2,350,630 - AO356_10410 0.66 -0.5 2,350,630 - AO356_10410 0.66 +0.5 2,350,630 - AO356_10410 0.66 -0.3 2,350,762 + AO356_10410 0.83 +0.7 2,350,763 - AO356_10410 0.83 +0.5 2,350,944 - +0.8 2,350,950 + +0.3 2,350,950 + +0.3 2,350,950 + +0.9 2,350,950 + +0.9 2,350,951 - -0.0 2,350,951 - -0.7 2,350,951 - -0.4 2,350,979 + AO356_10415 0.13 -0.1 2,350,980 - AO356_10415 0.13 -0.6 2,350,980 - AO356_10415 0.13 +0.4 2,350,997 + AO356_10415 0.16 +0.2 2,350,997 + AO356_10415 0.16 +0.8 2,350,997 + AO356_10415 0.16 -0.3 2,350,998 - AO356_10415 0.16 +0.1 2,350,998 - AO356_10415 0.16 +0.4 2,351,088 - AO356_10415 0.30 +0.1 2,351,088 - AO356_10415 0.30 -0.2 2,351,088 - AO356_10415 0.30 -0.4 2,351,224 + AO356_10415 0.50 +0.5 2,351,225 - AO356_10415 0.51 +0.4 2,351,255 - AO356_10415 0.55 +0.4 2,351,333 + AO356_10415 0.67 +0.9 2,351,333 + AO356_10415 0.67 +0.6 2,351,333 + AO356_10415 0.67 +0.3 2,351,334 - AO356_10415 0.67 +0.0 2,351,375 + AO356_10415 0.73 -0.3 2,351,429 + AO356_10415 0.82 +0.7 2,351,429 + AO356_10415 0.82 -0.2 2,351,430 - AO356_10415 0.82 +0.2 2,351,640 + AO356_10420 0.16 +0.2 2,351,641 - AO356_10420 0.17 +0.4 2,351,641 - AO356_10420 0.17 +0.3 2,351,649 + AO356_10420 0.18 +0.3 2,351,649 + AO356_10420 0.18 +1.1 2,351,649 + AO356_10420 0.18 -0.2 2,351,649 + AO356_10420 0.18 -0.0 2,351,649 + AO356_10420 0.18 +0.2 2,351,649 + AO356_10420 0.18 +0.3 2,351,649 + AO356_10420 0.18 -0.2 2,351,650 - AO356_10420 0.18 -0.4 2,351,650 - AO356_10420 0.18 -0.4 2,351,650 - AO356_10420 0.18 -2.2 2,351,650 - AO356_10420 0.18 -0.1 2,351,652 + AO356_10420 0.18 -0.1 2,351,652 + AO356_10420 0.18 -0.2 2,351,664 + AO356_10420 0.20 +0.6 2,351,664 + AO356_10420 0.20 -0.8 2,351,665 - AO356_10420 0.20 -1.5 2,351,665 - AO356_10420 0.20 +0.5 2,351,665 - AO356_10420 0.20 -0.1 2,351,679 + AO356_10420 0.22 +0.0 2,351,679 + AO356_10420 0.22 -0.6 2,351,679 + AO356_10420 0.22 -0.3 2,351,679 + AO356_10420 0.22 -0.8 2,351,680 - AO356_10420 0.22 -0.1 2,351,680 - AO356_10420 0.22 -0.2 2,351,680 - AO356_10420 0.22 +0.6 2,351,680 - AO356_10420 0.22 -2.7 2,351,680 - AO356_10420 0.22 -0.3 2,351,680 - AO356_10420 0.22 +0.3 2,351,680 - AO356_10420 0.22 +0.7 2,351,680 - AO356_10420 0.22 -1.5 2,351,793 + AO356_10420 0.39 +0.2 2,351,793 + AO356_10420 0.39 -0.3 2,351,794 - AO356_10420 0.39 +0.2
Or see this region's nucleotide sequence