Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07735 and AO356_07740 are separated by 299 nucleotides AO356_07740 and AO356_07745 are separated by 54 nucleotides AO356_07745 and AO356_07750 overlap by 4 nucleotides AO356_07750 and AO356_07755 are separated by 230 nucleotides
AO356_07735: AO356_07735 - hydroperoxidase, at 1,718,101 to 1,720,365
_07735
AO356_07740: AO356_07740 - chemotaxis protein, at 1,720,665 to 1,722,584
_07740
AO356_07745: AO356_07745 - plasmid stabilization protein, at 1,722,639 to 1,723,058
_07745
AO356_07750: AO356_07750 - plasmid stabilization protein, at 1,723,055 to 1,723,300
_07750
AO356_07755: AO356_07755 - toxin, at 1,723,531 to 1,726,080
_07755
Position (kb)
1720
1721
1722
1723 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1719.726 kb on + strand, within AO356_07735 at 1719.928 kb on + strand, within AO356_07735 at 1719.929 kb on - strand, within AO356_07735 at 1720.078 kb on - strand, within AO356_07735 at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.472 kb on + strand at 1720.472 kb on + strand at 1720.473 kb on - strand at 1720.603 kb on + strand at 1720.603 kb on + strand at 1720.603 kb on + strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.625 kb on + strand at 1720.625 kb on + strand at 1720.625 kb on + strand at 1720.626 kb on - strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1721.010 kb on + strand, within AO356_07740 at 1721.011 kb on - strand, within AO356_07740 at 1721.044 kb on - strand, within AO356_07740 at 1721.097 kb on + strand, within AO356_07740 at 1721.097 kb on + strand, within AO356_07740 at 1721.226 kb on + strand, within AO356_07740 at 1721.228 kb on + strand, within AO356_07740 at 1721.229 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1722.623 kb on - strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.692 kb on + strand, within AO356_07745 at 1722.708 kb on + strand, within AO356_07745 at 1722.731 kb on + strand, within AO356_07745 at 1722.732 kb on - strand, within AO356_07745 at 1722.802 kb on + strand, within AO356_07745 at 1723.053 kb on + strand at 1723.053 kb on + strand at 1723.054 kb on - strand at 1723.054 kb on - strand at 1723.065 kb on - strand at 1723.193 kb on + strand, within AO356_07750 at 1723.262 kb on + strand, within AO356_07750 at 1723.263 kb on - strand, within AO356_07750 at 1723.285 kb on + strand at 1723.286 kb on - strand at 1723.300 kb on + strand at 1723.301 kb on - strand at 1723.338 kb on + strand at 1723.339 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.432 kb on + strand at 1723.454 kb on + strand at 1723.479 kb on + strand at 1723.480 kb on - strand at 1723.480 kb on - strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,719,726 + AO356_07735 0.72 +0.4 1,719,928 + AO356_07735 0.81 -1.9 1,719,929 - AO356_07735 0.81 -1.0 1,720,078 - AO356_07735 0.87 -0.8 1,720,274 - -0.1 1,720,274 - +0.0 1,720,274 - -1.0 1,720,274 - +1.3 1,720,274 - -0.7 1,720,472 + +0.3 1,720,472 + -0.1 1,720,473 - -0.2 1,720,603 + +0.6 1,720,603 + -0.2 1,720,603 + -0.1 1,720,604 - -0.2 1,720,604 - +0.0 1,720,604 - +0.0 1,720,604 - +0.5 1,720,604 - +0.1 1,720,625 + +0.8 1,720,625 + -0.6 1,720,625 + +1.1 1,720,626 - +0.8 1,720,670 + -0.2 1,720,670 + -1.4 1,720,670 + -0.0 1,720,670 + -0.3 1,720,671 - -0.7 1,720,671 - -0.6 1,720,671 - -0.7 1,720,671 - +0.5 1,720,671 - -0.3 1,720,671 - +0.7 1,720,671 - +1.2 1,720,860 + AO356_07740 0.10 +0.0 1,720,860 + AO356_07740 0.10 +0.9 1,720,860 + AO356_07740 0.10 +0.3 1,720,860 + AO356_07740 0.10 -0.9 1,720,860 + AO356_07740 0.10 +0.9 1,720,860 + AO356_07740 0.10 -0.1 1,720,860 + AO356_07740 0.10 +1.6 1,720,860 + AO356_07740 0.10 +0.8 1,720,860 + AO356_07740 0.10 -0.1 1,720,861 - AO356_07740 0.10 +0.5 1,720,861 - AO356_07740 0.10 -0.0 1,720,861 - AO356_07740 0.10 -1.6 1,721,010 + AO356_07740 0.18 +0.1 1,721,011 - AO356_07740 0.18 +0.6 1,721,044 - AO356_07740 0.20 +0.8 1,721,097 + AO356_07740 0.23 +0.3 1,721,097 + AO356_07740 0.23 +0.1 1,721,226 + AO356_07740 0.29 +0.1 1,721,228 + AO356_07740 0.29 +0.0 1,721,229 - AO356_07740 0.29 +0.8 1,721,479 - AO356_07740 0.42 -0.7 1,721,479 - AO356_07740 0.42 +0.6 1,721,479 - AO356_07740 0.42 -0.5 1,722,623 - -0.3 1,722,626 + +0.6 1,722,626 + +0.4 1,722,626 + +0.3 1,722,626 + +0.6 1,722,626 + +0.2 1,722,626 + -0.3 1,722,626 + +0.9 1,722,627 - +1.1 1,722,627 - -0.5 1,722,627 - +0.3 1,722,627 - -0.4 1,722,627 - +0.1 1,722,627 - -0.0 1,722,627 - -0.2 1,722,627 - +0.7 1,722,627 - +0.3 1,722,627 - -0.3 1,722,692 + AO356_07745 0.13 -1.1 1,722,708 + AO356_07745 0.16 -0.4 1,722,731 + AO356_07745 0.22 +0.0 1,722,732 - AO356_07745 0.22 +0.7 1,722,802 + AO356_07745 0.39 -0.6 1,723,053 + -0.3 1,723,053 + +0.8 1,723,054 - -0.5 1,723,054 - -0.2 1,723,065 - +1.0 1,723,193 + AO356_07750 0.56 -0.4 1,723,262 + AO356_07750 0.84 -0.4 1,723,263 - AO356_07750 0.85 -1.1 1,723,285 + +0.7 1,723,286 - +0.1 1,723,300 + -0.1 1,723,301 - -0.5 1,723,338 + -0.1 1,723,339 - -2.2 1,723,344 - +0.3 1,723,344 - -0.3 1,723,344 - +0.8 1,723,432 + +1.8 1,723,454 + -0.5 1,723,479 + -0.2 1,723,480 - +0.7 1,723,480 - +0.3 1,723,521 + +0.2 1,723,521 + -0.8 1,723,521 + -0.5 1,723,522 - +1.0
Or see this region's nucleotide sequence