Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07535

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07520 and AO356_07525 are separated by 59 nucleotidesAO356_07525 and AO356_07530 overlap by 4 nucleotidesAO356_07530 and AO356_07535 are separated by 7 nucleotidesAO356_07535 and AO356_07540 are separated by 118 nucleotidesAO356_07540 and AO356_07545 are separated by 328 nucleotides AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162 _07520 AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524 _07525 AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964 _07530 AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375 _07535 AO356_07540: AO356_07540 - SsrA-binding protein, at 1,668,494 to 1,668,976 _07540 AO356_07545: AO356_07545 - transcriptional regulator PdhR, at 1,669,305 to 1,670,072 _07545 Position (kb) 1666 1667 1668 1669Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1666.160 kb on + strandat 1666.224 kb on - strandat 1666.502 kb on + strandat 1666.502 kb on + strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strandat 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.267 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.269 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.367 kb on - strand, within AO356_07535at 1667.636 kb on + strand, within AO356_07535at 1667.636 kb on + strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.637 kb on - strand, within AO356_07535at 1667.645 kb on + strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.646 kb on - strand, within AO356_07535at 1667.787 kb on - strand, within AO356_07535at 1667.787 kb on - strand, within AO356_07535at 1667.952 kb on - strand, within AO356_07535at 1667.952 kb on - strand, within AO356_07535at 1668.011 kb on + strand, within AO356_07535at 1668.011 kb on + strand, within AO356_07535at 1668.011 kb on + strand, within AO356_07535at 1668.011 kb on + strand, within AO356_07535at 1668.012 kb on - strand, within AO356_07535at 1668.012 kb on - strand, within AO356_07535at 1668.012 kb on - strand, within AO356_07535at 1668.042 kb on - strand, within AO356_07535at 1668.042 kb on - strand, within AO356_07535at 1668.042 kb on - strand, within AO356_07535at 1668.042 kb on - strand, within AO356_07535at 1668.127 kb on + strand, within AO356_07535at 1668.232 kb on + strand, within AO356_07535at 1668.233 kb on - strand, within AO356_07535at 1668.233 kb on - strand, within AO356_07535at 1668.233 kb on - strand, within AO356_07535at 1668.233 kb on - strand, within AO356_07535at 1668.251 kb on + strandat 1668.252 kb on - strandat 1668.266 kb on + strandat 1668.267 kb on - strandat 1668.267 kb on - strandat 1668.283 kb on - strandat 1668.283 kb on - strandat 1668.286 kb on - strandat 1668.320 kb on - strandat 1668.320 kb on - strandat 1668.320 kb on - strandat 1668.456 kb on + strandat 1668.479 kb on + strandat 1668.479 kb on + strandat 1668.479 kb on + strandat 1668.480 kb on - strandat 1668.480 kb on - strandat 1668.481 kb on + strandat 1668.481 kb on + strandat 1668.482 kb on - strandat 1668.482 kb on - strandat 1668.558 kb on - strand, within AO356_07540at 1668.558 kb on - strand, within AO356_07540at 1668.609 kb on + strand, within AO356_07540at 1668.695 kb on - strand, within AO356_07540at 1669.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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1,666,160 + +0.1
1,666,224 - -1.6
1,666,502 + +0.5
1,666,502 + -1.3
1,666,503 - -2.3
1,666,503 - -1.3
1,666,503 - +0.2
1,666,514 - -0.4
1,666,514 - -0.1
1,666,514 - +0.2
1,666,967 - +0.2
1,666,967 - -0.4
1,666,967 - -0.3
1,666,967 - -0.8
1,666,967 - -0.2
1,666,967 - -1.3
1,666,967 - -0.5
1,666,967 - +0.4
1,666,967 - -0.0
1,666,967 - -0.4
1,667,000 - -1.2
1,667,000 - +0.1
1,667,000 - -0.2
1,667,025 - +1.7
1,667,025 - +0.8
1,667,025 - +0.1
1,667,267 - AO356_07535 0.21 +0.3
1,667,267 - AO356_07535 0.21 +0.0
1,667,267 - AO356_07535 0.21 -0.4
1,667,267 - AO356_07535 0.21 -1.3
1,667,267 - AO356_07535 0.21 +1.2
1,667,267 - AO356_07535 0.21 -0.3
1,667,267 - AO356_07535 0.21 -0.1
1,667,267 - AO356_07535 0.21 +0.2
1,667,267 - AO356_07535 0.21 -0.2
1,667,269 - AO356_07535 0.21 +0.1
1,667,269 - AO356_07535 0.21 -0.2
1,667,269 - AO356_07535 0.21 -0.0
1,667,269 - AO356_07535 0.21 -0.0
1,667,269 - AO356_07535 0.21 -0.6
1,667,269 - AO356_07535 0.21 +0.7
1,667,269 - AO356_07535 0.21 -1.0
1,667,269 - AO356_07535 0.21 +1.3
1,667,269 - AO356_07535 0.21 +0.6
1,667,269 - AO356_07535 0.21 -0.2
1,667,269 - AO356_07535 0.21 +0.3
1,667,269 - AO356_07535 0.21 +0.8
1,667,367 - AO356_07535 0.28 +0.2
1,667,367 - AO356_07535 0.28 -0.4
1,667,367 - AO356_07535 0.28 -0.0
1,667,367 - AO356_07535 0.28 +0.4
1,667,367 - AO356_07535 0.28 -0.5
1,667,367 - AO356_07535 0.28 +0.5
1,667,367 - AO356_07535 0.28 +0.4
1,667,367 - AO356_07535 0.28 -0.4
1,667,367 - AO356_07535 0.28 -0.2
1,667,636 + AO356_07535 0.47 -0.8
1,667,636 + AO356_07535 0.47 +0.4
1,667,637 - AO356_07535 0.47 -0.6
1,667,637 - AO356_07535 0.47 -0.7
1,667,637 - AO356_07535 0.47 -0.8
1,667,637 - AO356_07535 0.47 +0.5
1,667,637 - AO356_07535 0.47 +0.7
1,667,637 - AO356_07535 0.47 -1.1
1,667,645 + AO356_07535 0.48 -0.8
1,667,646 - AO356_07535 0.48 -0.8
1,667,646 - AO356_07535 0.48 -0.7
1,667,646 - AO356_07535 0.48 +0.4
1,667,787 - AO356_07535 0.58 -3.3
1,667,787 - AO356_07535 0.58 +0.8
1,667,952 - AO356_07535 0.70 -0.0
1,667,952 - AO356_07535 0.70 -0.3
1,668,011 + AO356_07535 0.74 -1.1
1,668,011 + AO356_07535 0.74 +0.2
1,668,011 + AO356_07535 0.74 -1.0
1,668,011 + AO356_07535 0.74 -0.1
1,668,012 - AO356_07535 0.74 +0.6
1,668,012 - AO356_07535 0.74 +0.3
1,668,012 - AO356_07535 0.74 +0.1
1,668,042 - AO356_07535 0.76 +0.3
1,668,042 - AO356_07535 0.76 +1.0
1,668,042 - AO356_07535 0.76 -0.6
1,668,042 - AO356_07535 0.76 +0.5
1,668,127 + AO356_07535 0.82 -0.8
1,668,232 + AO356_07535 0.90 +0.4
1,668,233 - AO356_07535 0.90 -0.6
1,668,233 - AO356_07535 0.90 +1.8
1,668,233 - AO356_07535 0.90 -1.0
1,668,233 - AO356_07535 0.90 -0.2
1,668,251 + -0.3
1,668,252 - +0.3
1,668,266 + -0.0
1,668,267 - +0.0
1,668,267 - -2.6
1,668,283 - -0.2
1,668,283 - -0.3
1,668,286 - +0.8
1,668,320 - +0.3
1,668,320 - +0.4
1,668,320 - -0.4
1,668,456 + -0.7
1,668,479 + +0.8
1,668,479 + +0.3
1,668,479 + -0.5
1,668,480 - -2.1
1,668,480 - -1.2
1,668,481 + -1.2
1,668,481 + +1.1
1,668,482 - +1.2
1,668,482 - -1.6
1,668,558 - AO356_07540 0.13 -0.9
1,668,558 - AO356_07540 0.13 -1.0
1,668,609 + AO356_07540 0.24 +0.5
1,668,695 - AO356_07540 0.42 -1.1
1,669,168 + -0.1

Or see this region's nucleotide sequence