Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07515 and AO356_07520 are separated by 97 nucleotides AO356_07520 and AO356_07525 are separated by 59 nucleotides AO356_07525 and AO356_07530 overlap by 4 nucleotides AO356_07530 and AO356_07535 are separated by 7 nucleotides
AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537
_07515
AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162
_07520
AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524
_07525
AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964
_07530
AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375
_07535
Position (kb)
1666
1667 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1666.160 kb on + strand at 1666.224 kb on - strand at 1666.502 kb on + strand at 1666.502 kb on + strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.636 kb on + strand, within AO356_07535 at 1667.636 kb on + strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.645 kb on + strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.787 kb on - strand, within AO356_07535 at 1667.787 kb on - strand, within AO356_07535 at 1667.952 kb on - strand, within AO356_07535 at 1667.952 kb on - strand, within AO356_07535
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,666,160 + +0.1 1,666,224 - -1.6 1,666,502 + +0.5 1,666,502 + -1.3 1,666,503 - -2.3 1,666,503 - -1.3 1,666,503 - +0.2 1,666,514 - -0.4 1,666,514 - -0.1 1,666,514 - +0.2 1,666,967 - +0.2 1,666,967 - -0.4 1,666,967 - -0.3 1,666,967 - -0.8 1,666,967 - -0.2 1,666,967 - -1.3 1,666,967 - -0.5 1,666,967 - +0.4 1,666,967 - -0.0 1,666,967 - -0.4 1,667,000 - -1.2 1,667,000 - +0.1 1,667,000 - -0.2 1,667,025 - +1.7 1,667,025 - +0.8 1,667,025 - +0.1 1,667,267 - AO356_07535 0.21 +0.3 1,667,267 - AO356_07535 0.21 +0.0 1,667,267 - AO356_07535 0.21 -0.4 1,667,267 - AO356_07535 0.21 -1.3 1,667,267 - AO356_07535 0.21 +1.2 1,667,267 - AO356_07535 0.21 -0.3 1,667,267 - AO356_07535 0.21 -0.1 1,667,267 - AO356_07535 0.21 +0.2 1,667,267 - AO356_07535 0.21 -0.2 1,667,269 - AO356_07535 0.21 +0.1 1,667,269 - AO356_07535 0.21 -0.2 1,667,269 - AO356_07535 0.21 -0.0 1,667,269 - AO356_07535 0.21 -0.0 1,667,269 - AO356_07535 0.21 -0.6 1,667,269 - AO356_07535 0.21 +0.7 1,667,269 - AO356_07535 0.21 -1.0 1,667,269 - AO356_07535 0.21 +1.3 1,667,269 - AO356_07535 0.21 +0.6 1,667,269 - AO356_07535 0.21 -0.2 1,667,269 - AO356_07535 0.21 +0.3 1,667,269 - AO356_07535 0.21 +0.8 1,667,367 - AO356_07535 0.28 +0.2 1,667,367 - AO356_07535 0.28 -0.4 1,667,367 - AO356_07535 0.28 -0.0 1,667,367 - AO356_07535 0.28 +0.4 1,667,367 - AO356_07535 0.28 -0.5 1,667,367 - AO356_07535 0.28 +0.5 1,667,367 - AO356_07535 0.28 +0.4 1,667,367 - AO356_07535 0.28 -0.4 1,667,367 - AO356_07535 0.28 -0.2 1,667,636 + AO356_07535 0.47 -0.8 1,667,636 + AO356_07535 0.47 +0.4 1,667,637 - AO356_07535 0.47 -0.6 1,667,637 - AO356_07535 0.47 -0.7 1,667,637 - AO356_07535 0.47 -0.8 1,667,637 - AO356_07535 0.47 +0.5 1,667,637 - AO356_07535 0.47 +0.7 1,667,637 - AO356_07535 0.47 -1.1 1,667,645 + AO356_07535 0.48 -0.8 1,667,646 - AO356_07535 0.48 -0.8 1,667,646 - AO356_07535 0.48 -0.7 1,667,646 - AO356_07535 0.48 +0.4 1,667,787 - AO356_07535 0.58 -3.3 1,667,787 - AO356_07535 0.58 +0.8 1,667,952 - AO356_07535 0.70 -0.0 1,667,952 - AO356_07535 0.70 -0.3
Or see this region's nucleotide sequence