Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26885

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26880 and AO353_26885 are separated by 21 nucleotidesAO353_26885 and AO353_26890 are separated by 83 nucleotides AO353_26880: AO353_26880 - MFS transporter, at 5,892,134 to 5,893,432 _26880 AO353_26885: AO353_26885 - phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data), at 5,893,454 to 5,894,440 _26885 AO353_26890: AO353_26890 - aspartate aminotransferase, at 5,894,524 to 5,895,711 _26890 Position (kb) 5893 5894 5895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5892.553 kb on + strand, within AO353_26880at 5892.553 kb on + strand, within AO353_26880at 5892.553 kb on + strand, within AO353_26880at 5892.553 kb on + strand, within AO353_26880at 5892.554 kb on - strand, within AO353_26880at 5892.682 kb on + strand, within AO353_26880at 5892.682 kb on + strand, within AO353_26880at 5892.682 kb on + strand, within AO353_26880at 5892.876 kb on - strand, within AO353_26880at 5892.962 kb on + strand, within AO353_26880at 5893.050 kb on + strand, within AO353_26880at 5893.050 kb on + strand, within AO353_26880at 5893.051 kb on - strand, within AO353_26880at 5893.051 kb on - strand, within AO353_26880at 5893.079 kb on + strand, within AO353_26880at 5893.079 kb on + strand, within AO353_26880at 5893.079 kb on + strand, within AO353_26880at 5893.079 kb on + strand, within AO353_26880at 5893.141 kb on + strand, within AO353_26880at 5893.141 kb on + strand, within AO353_26880at 5893.141 kb on + strand, within AO353_26880at 5893.141 kb on + strand, within AO353_26880at 5893.141 kb on + strand, within AO353_26880at 5893.141 kb on + strandat 5893.142 kb on - strandat 5893.142 kb on - strand, within AO353_26880at 5893.142 kb on - strand, within AO353_26880at 5893.142 kb on - strand, within AO353_26880at 5893.142 kb on - strand, within AO353_26880at 5893.142 kb on - strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.145 kb on + strand, within AO353_26880at 5893.146 kb on - strand, within AO353_26880at 5893.146 kb on - strand, within AO353_26880at 5893.146 kb on - strand, within AO353_26880at 5893.146 kb on - strand, within AO353_26880at 5893.262 kb on + strand, within AO353_26880at 5893.263 kb on - strand, within AO353_26880at 5893.263 kb on - strand, within AO353_26880at 5893.263 kb on - strand, within AO353_26880at 5893.275 kb on - strand, within AO353_26880at 5893.310 kb on + strandat 5893.345 kb on - strandat 5893.476 kb on - strandat 5893.691 kb on + strand, within AO353_26885at 5893.691 kb on + strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.692 kb on - strand, within AO353_26885at 5893.704 kb on - strand, within AO353_26885at 5893.881 kb on + strand, within AO353_26885at 5893.881 kb on + strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strandat 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.882 kb on - strand, within AO353_26885at 5893.984 kb on + strand, within AO353_26885at 5893.985 kb on - strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.143 kb on + strand, within AO353_26885at 5894.144 kb on - strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.149 kb on + strand, within AO353_26885at 5894.150 kb on - strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.155 kb on + strand, within AO353_26885at 5894.156 kb on - strand, within AO353_26885at 5894.156 kb on - strand, within AO353_26885at 5894.438 kb on + strandat 5894.438 kb on + strandat 5894.500 kb on + strandat 5894.500 kb on + strandat 5894.501 kb on - strandat 5894.507 kb on + strandat 5894.507 kb on + strandat 5894.507 kb on + strandat 5894.676 kb on - strand, within AO353_26890at 5894.826 kb on - strand, within AO353_26890at 5895.027 kb on + strand, within AO353_26890at 5895.027 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.077 kb on + strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.078 kb on - strand, within AO353_26890at 5895.079 kb on + strandat 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.079 kb on + strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.080 kb on - strand, within AO353_26890at 5895.092 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.326 kb on + strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.327 kb on - strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.335 kb on + strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.336 kb on - strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.395 kb on + strand, within AO353_26890at 5895.396 kb on - strand, within AO353_26890

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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5,892,553 + AO353_26880 0.32 +0.0
5,892,553 + AO353_26880 0.32 -1.9
5,892,553 + AO353_26880 0.32 -1.1
5,892,553 + AO353_26880 0.32 -0.5
5,892,554 - AO353_26880 0.32 +0.3
5,892,682 + AO353_26880 0.42 -0.1
5,892,682 + AO353_26880 0.42 -1.7
5,892,682 + AO353_26880 0.42 -1.6
5,892,876 - AO353_26880 0.57 -0.5
5,892,962 + AO353_26880 0.64 -0.4
5,893,050 + AO353_26880 0.71 +0.3
5,893,050 + AO353_26880 0.71 -0.2
5,893,051 - AO353_26880 0.71 -0.1
5,893,051 - AO353_26880 0.71 -0.3
5,893,079 + AO353_26880 0.73 -0.2
5,893,079 + AO353_26880 0.73 +0.6
5,893,079 + AO353_26880 0.73 -1.5
5,893,079 + AO353_26880 0.73 +0.5
5,893,141 + AO353_26880 0.78 +0.7
5,893,141 + AO353_26880 0.78 -0.3
5,893,141 + AO353_26880 0.78 +1.3
5,893,141 + AO353_26880 0.78 +0.4
5,893,141 + AO353_26880 0.78 -0.9
5,893,141 + -2.1
5,893,142 - -0.7
5,893,142 - AO353_26880 0.78 +0.3
5,893,142 - AO353_26880 0.78 +0.3
5,893,142 - AO353_26880 0.78 -1.0
5,893,142 - AO353_26880 0.78 -0.2
5,893,142 - AO353_26880 0.78 +0.8
5,893,145 + AO353_26880 0.78 -0.4
5,893,145 + AO353_26880 0.78 -1.3
5,893,145 + AO353_26880 0.78 -1.5
5,893,145 + AO353_26880 0.78 +0.3
5,893,145 + AO353_26880 0.78 +1.1
5,893,145 + AO353_26880 0.78 +0.4
5,893,145 + AO353_26880 0.78 -0.5
5,893,145 + AO353_26880 0.78 -1.5
5,893,145 + AO353_26880 0.78 -0.2
5,893,146 - AO353_26880 0.78 +0.4
5,893,146 - AO353_26880 0.78 +0.4
5,893,146 - AO353_26880 0.78 -1.2
5,893,146 - AO353_26880 0.78 -0.3
5,893,262 + AO353_26880 0.87 -0.7
5,893,263 - AO353_26880 0.87 -0.7
5,893,263 - AO353_26880 0.87 -0.9
5,893,263 - AO353_26880 0.87 -1.3
5,893,275 - AO353_26880 0.88 -1.3
5,893,310 + +1.3
5,893,345 - -0.6
5,893,476 - +0.9
5,893,691 + AO353_26885 0.24 -0.1
5,893,691 + AO353_26885 0.24 +0.9
5,893,692 - AO353_26885 0.24 -0.6
5,893,692 - AO353_26885 0.24 -1.3
5,893,692 - AO353_26885 0.24 -1.3
5,893,692 - AO353_26885 0.24 +0.3
5,893,692 - AO353_26885 0.24 -1.1
5,893,704 - AO353_26885 0.25 +1.0
5,893,881 + AO353_26885 0.43 -2.6
5,893,881 + AO353_26885 0.43 -0.6
5,893,882 - AO353_26885 0.43 +1.1
5,893,882 - AO353_26885 0.43 -0.5
5,893,882 - AO353_26885 0.43 -0.4
5,893,882 - AO353_26885 0.43 +0.0
5,893,882 - AO353_26885 0.43 -1.6
5,893,882 - +0.9
5,893,882 - AO353_26885 0.43 -0.0
5,893,882 - AO353_26885 0.43 -0.7
5,893,882 - AO353_26885 0.43 -2.1
5,893,984 + AO353_26885 0.54 +0.5
5,893,985 - AO353_26885 0.54 +0.9
5,894,143 + AO353_26885 0.70 +0.6
5,894,143 + AO353_26885 0.70 -0.7
5,894,143 + AO353_26885 0.70 -0.9
5,894,144 - AO353_26885 0.70 -2.4
5,894,149 + AO353_26885 0.70 -0.7
5,894,149 + AO353_26885 0.70 -0.4
5,894,149 + AO353_26885 0.70 -2.6
5,894,150 - AO353_26885 0.71 -0.7
5,894,155 + AO353_26885 0.71 +0.2
5,894,155 + AO353_26885 0.71 -1.1
5,894,155 + AO353_26885 0.71 -1.3
5,894,155 + AO353_26885 0.71 +0.3
5,894,156 - AO353_26885 0.71 -0.4
5,894,156 - AO353_26885 0.71 -0.2
5,894,438 + +1.7
5,894,438 + +0.8
5,894,500 + +0.2
5,894,500 + -0.2
5,894,501 - -0.3
5,894,507 + -2.3
5,894,507 + +0.8
5,894,507 + +0.2
5,894,676 - AO353_26890 0.13 +0.0
5,894,826 - AO353_26890 0.25 -0.1
5,895,027 + AO353_26890 0.42 -0.5
5,895,027 + AO353_26890 0.42 -0.2
5,895,077 + AO353_26890 0.47 +0.4
5,895,077 + AO353_26890 0.47 +0.1
5,895,077 + AO353_26890 0.47 -0.1
5,895,077 + AO353_26890 0.47 +0.3
5,895,077 + AO353_26890 0.47 +0.0
5,895,077 + AO353_26890 0.47 -1.5
5,895,077 + AO353_26890 0.47 -0.5
5,895,077 + AO353_26890 0.47 +0.4
5,895,077 + AO353_26890 0.47 -1.7
5,895,077 + AO353_26890 0.47 -0.5
5,895,077 + AO353_26890 0.47 +0.5
5,895,078 - AO353_26890 0.47 +0.1
5,895,078 - AO353_26890 0.47 +0.2
5,895,078 - AO353_26890 0.47 -2.0
5,895,078 - AO353_26890 0.47 -0.7
5,895,078 - AO353_26890 0.47 +0.9
5,895,078 - AO353_26890 0.47 -1.9
5,895,078 - AO353_26890 0.47 +0.2
5,895,078 - AO353_26890 0.47 -0.6
5,895,078 - AO353_26890 0.47 +0.3
5,895,079 + -0.3
5,895,079 + AO353_26890 0.47 -0.4
5,895,079 + AO353_26890 0.47 -0.5
5,895,079 + AO353_26890 0.47 -3.2
5,895,079 + AO353_26890 0.47 +1.1
5,895,080 - AO353_26890 0.47 -0.5
5,895,080 - AO353_26890 0.47 -0.4
5,895,080 - AO353_26890 0.47 -2.1
5,895,080 - AO353_26890 0.47 -2.5
5,895,080 - AO353_26890 0.47 -1.7
5,895,080 - AO353_26890 0.47 +1.3
5,895,080 - AO353_26890 0.47 -0.3
5,895,080 - AO353_26890 0.47 -0.1
5,895,092 + AO353_26890 0.48 +1.3
5,895,326 + AO353_26890 0.68 -1.1
5,895,326 + AO353_26890 0.68 -0.4
5,895,326 + AO353_26890 0.68 -0.6
5,895,326 + AO353_26890 0.68 +0.3
5,895,326 + AO353_26890 0.68 -1.2
5,895,326 + AO353_26890 0.68 -1.4
5,895,326 + AO353_26890 0.68 -1.9
5,895,326 + AO353_26890 0.68 +0.3
5,895,327 - AO353_26890 0.68 +1.3
5,895,327 - AO353_26890 0.68 +0.3
5,895,327 - AO353_26890 0.68 -1.0
5,895,327 - AO353_26890 0.68 +0.9
5,895,327 - AO353_26890 0.68 -0.3
5,895,327 - AO353_26890 0.68 +2.8
5,895,327 - AO353_26890 0.68 -0.8
5,895,327 - AO353_26890 0.68 +0.3
5,895,327 - AO353_26890 0.68 +1.1
5,895,327 - AO353_26890 0.68 -0.4
5,895,335 + AO353_26890 0.68 +1.5
5,895,335 + AO353_26890 0.68 +0.1
5,895,335 + AO353_26890 0.68 +0.6
5,895,335 + AO353_26890 0.68 +0.3
5,895,335 + AO353_26890 0.68 +0.1
5,895,335 + AO353_26890 0.68 +1.4
5,895,335 + AO353_26890 0.68 +0.1
5,895,336 - AO353_26890 0.68 -1.9
5,895,336 - AO353_26890 0.68 -0.7
5,895,336 - AO353_26890 0.68 +0.8
5,895,336 - AO353_26890 0.68 +0.8
5,895,336 - AO353_26890 0.68 -1.3
5,895,336 - AO353_26890 0.68 -0.5
5,895,336 - AO353_26890 0.68 -0.5
5,895,336 - AO353_26890 0.68 -1.3
5,895,395 + AO353_26890 0.73 -1.1
5,895,395 + AO353_26890 0.73 -0.3
5,895,395 + AO353_26890 0.73 -1.1
5,895,396 - AO353_26890 0.73 -1.0

Or see this region's nucleotide sequence