Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6045

Experiment: N2E2wt with N1B4m denitrifying repB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_6043 and Pf1N1B4_6044 are separated by 230 nucleotidesPf1N1B4_6044 and Pf1N1B4_6045 are separated by 243 nucleotides Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565 _6043 Pf1N1B4_6044 - hypothetical protein, at 506,796 to 507,065 _6044 Pf1N1B4_6045 - CigR (Putative inner membrane protein), at 507,309 to 507,545 _6045 Position (kb) 507 508Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 506.309 kb on + strand, within Pf1N1B4_6043at 506.309 kb on + strand, within Pf1N1B4_6043at 506.309 kb on + strand, within Pf1N1B4_6043at 506.310 kb on - strandat 506.310 kb on - strand, within Pf1N1B4_6043at 506.310 kb on - strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strandat 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.564 kb on - strandat 506.666 kb on + strandat 506.667 kb on - strandat 507.153 kb on + strandat 507.165 kb on + strandat 507.165 kb on + strandat 507.165 kb on + strandat 507.166 kb on - strandat 507.166 kb on - strandat 507.261 kb on + strandat 507.261 kb on + strandat 507.261 kb on + strandat 507.262 kb on - strandat 507.262 kb on - strandat 507.272 kb on - strandat 507.272 kb on - strandat 507.337 kb on + strand, within Pf1N1B4_6045at 507.338 kb on - strand, within Pf1N1B4_6045at 507.406 kb on + strand, within Pf1N1B4_6045at 507.407 kb on - strandat 507.407 kb on - strand, within Pf1N1B4_6045at 507.407 kb on - strand, within Pf1N1B4_6045at 507.746 kb on + strandat 507.747 kb on - strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.770 kb on + strandat 507.771 kb on - strandat 507.771 kb on - strandat 507.771 kb on - strandat 507.771 kb on - strandat 507.776 kb on + strandat 507.776 kb on + strandat 507.777 kb on - strandat 507.777 kb on - strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.813 kb on + strandat 507.814 kb on - strandat 507.814 kb on - strandat 507.814 kb on - strandat 507.814 kb on - strandat 507.815 kb on + strandat 507.815 kb on + strandat 507.815 kb on + strandat 507.816 kb on - strandat 507.834 kb on + strandat 507.834 kb on + strandat 507.834 kb on + strandat 507.835 kb on - strandat 507.976 kb on - strandat 508.014 kb on + strandat 508.015 kb on - strandat 508.038 kb on + strandat 508.038 kb on + strandat 508.186 kb on - strandat 508.186 kb on - strandat 508.186 kb on - strandat 508.186 kb on - strandat 508.280 kb on - strandat 508.280 kb on - strandat 508.301 kb on + strandat 508.337 kb on - strandat 508.344 kb on + strandat 508.345 kb on - strandat 508.345 kb on - strandat 508.345 kb on - strandat 508.345 kb on - strandat 508.345 kb on - strandat 508.398 kb on - strandat 508.519 kb on + strandat 508.520 kb on - strandat 508.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N2E2wt with N1B4m denitrifying repB
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506,309 + Pf1N1B4_6043 0.79 -0.9
506,309 + Pf1N1B4_6043 0.79 -1.1
506,309 + Pf1N1B4_6043 0.79 +0.5
506,310 - +0.5
506,310 - Pf1N1B4_6043 0.79 -1.6
506,310 - Pf1N1B4_6043 0.79 -0.9
506,311 + Pf1N1B4_6043 0.79 -2.3
506,311 + Pf1N1B4_6043 0.79 -1.8
506,311 + Pf1N1B4_6043 0.79 +0.5
506,311 + Pf1N1B4_6043 0.79 -1.0
506,311 + Pf1N1B4_6043 0.79 -2.4
506,311 + Pf1N1B4_6043 0.79 -0.9
506,311 + Pf1N1B4_6043 0.79 -2.7
506,311 + Pf1N1B4_6043 0.79 +0.5
506,312 - Pf1N1B4_6043 0.79 +0.3
506,312 - Pf1N1B4_6043 0.79 +0.2
506,312 - -1.8
506,312 - Pf1N1B4_6043 0.79 +0.5
506,312 - Pf1N1B4_6043 0.79 -0.5
506,312 - Pf1N1B4_6043 0.79 +0.5
506,315 + Pf1N1B4_6043 0.79 +0.5
506,315 + Pf1N1B4_6043 0.79 -1.8
506,315 + Pf1N1B4_6043 0.79 +0.5
506,315 + Pf1N1B4_6043 0.79 -1.1
506,315 + Pf1N1B4_6043 0.79 -0.1
506,315 + Pf1N1B4_6043 0.79 +0.5
506,315 + Pf1N1B4_6043 0.79 -4.8
506,316 - Pf1N1B4_6043 0.79 -0.7
506,316 - Pf1N1B4_6043 0.79 +0.3
506,316 - Pf1N1B4_6043 0.79 -0.5
506,316 - Pf1N1B4_6043 0.79 +1.5
506,316 - Pf1N1B4_6043 0.79 -1.0
506,563 + -0.7
506,563 + +0.1
506,563 + -2.3
506,563 + -1.7
506,563 + +0.5
506,564 - -2.8
506,666 + +0.5
506,667 - -1.1
507,153 + +0.5
507,165 + -3.2
507,165 + -1.8
507,165 + -0.5
507,166 - -1.2
507,166 - -1.1
507,261 + +0.3
507,261 + -0.2
507,261 + -1.1
507,262 - -0.8
507,262 - -2.3
507,272 - +0.5
507,272 - +0.5
507,337 + Pf1N1B4_6045 0.12 +0.3
507,338 - Pf1N1B4_6045 0.12 -1.4
507,406 + Pf1N1B4_6045 0.41 -3.5
507,407 - +0.3
507,407 - Pf1N1B4_6045 0.41 -2.5
507,407 - Pf1N1B4_6045 0.41 +0.5
507,746 + +0.5
507,747 - -0.5
507,770 + -2.0
507,770 + -1.2
507,770 + +1.5
507,770 + +0.5
507,770 + +0.5
507,770 + +0.5
507,770 + -2.1
507,771 - +0.0
507,771 - -1.1
507,771 - +0.5
507,771 - +1.0
507,776 + -2.4
507,776 + -0.4
507,777 - +0.1
507,777 - +0.5
507,813 + -2.8
507,813 + -1.1
507,813 + +0.2
507,813 + +0.5
507,813 + -3.1
507,813 + +0.5
507,813 + -0.3
507,813 + +0.5
507,813 + +0.9
507,813 + -0.1
507,813 + +2.4
507,814 - -1.8
507,814 - +2.8
507,814 - -1.5
507,814 - -0.9
507,815 + -1.2
507,815 + +0.5
507,815 + -3.9
507,816 - -1.6
507,834 + -1.5
507,834 + +0.5
507,834 + -1.4
507,835 - +0.5
507,976 - -0.7
508,014 + -1.3
508,015 - +0.1
508,038 + +0.3
508,038 + -1.1
508,186 - -1.3
508,186 - +0.5
508,186 - -0.4
508,186 - -0.5
508,280 - +0.6
508,280 - +0.1
508,301 + -1.1
508,337 - +0.5
508,344 + +0.5
508,345 - +0.5
508,345 - -0.5
508,345 - -1.8
508,345 - -3.3
508,345 - +0.5
508,398 - -0.5
508,519 + -2.8
508,520 - -3.4
508,542 - -2.5

Or see this region's nucleotide sequence